Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000868 (pflA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000868 showshow history
Names
pflA ECDH10B_0972
Product
pyruvate formate lyase activating enzyme 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1003491 1004231 741 247
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012838 (IPR012838 Pyruvate formate-lyase 1 activating enzyme) Jul 2009
Automated Process Approved IPR007197 (IPR007197 Radical SAM) Jul 2009
Automated Process Approved IPR001989 (IPR001989 Radical-activating enzyme, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pflA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003068
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0972 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyruvate formate lyase activating enzyme 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012838 Pyruvate formate-lyase 1 activating enzyme Protein Sequence Similarity - InterPro Domain: IPR012838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR007197 Radical SAM Protein Sequence Similarity - InterPro Domain: IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001989 Radical-activating enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003068 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003068
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006800 (OBSOLETE) oxygen and reactive oxygen species metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007197
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001989
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043365 [formate-C-acetyltransferase]-activating enzyme activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001036 pflA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001057 pflA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019606 pflA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002218 pflA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004686 pflA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007974 pflA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000921 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005580 pflA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000812 pflA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008566 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007974 pflA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007899 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077130 pflA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009406 pflA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008447 pflA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000942 pflA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005426 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002206 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009766 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008815 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010318 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010235 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005903 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008838 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009654 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008922 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009311 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008549 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009105 pflA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007636 pflA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025066 pflA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007161 pflA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005687 pflA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003068 pflA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000911 pflA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000986 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002218 pflA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130899 pflA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005667 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000976 pflA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003676 pflA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003943 pflA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001998 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005153 pflA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002094 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001098 pflA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005307 pflA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002971 pflA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002873 pflA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007954 pflA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005432 pflA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004790 pflA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007386 pflA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005371 pflA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004580 pflA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005372 pflA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007907 pflA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001840 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001828 pflA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002563 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005660 pflA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005686 pflA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005172 pflA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006195 pflA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107193 pflA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083678 pflA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093454 pflA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008495 pflA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009061 pflA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008755 pflA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002427 pflA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007837 pflA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007155 pflA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002715 pflA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071989 pflA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087250 pflA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000955 pflA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000971 pflA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001431 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004647 act CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001320 pflA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000978 pflA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000624 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237078 pflA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005730 pflA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000827 pflA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005501 pflA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002001 pflA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119915 pflA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006258 pflA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004536 pflA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001274 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008318 pflA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005079 pflA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032531 pflA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005230 pflA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003116 pflA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002773 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005890 pflA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006576 pflA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001478 pflA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001792 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003173 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 998491 to 1009231
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000863ycaCCDScomplement998082998708Downstream
AEC-0000864ycaDCDSforward9990221000170Downstream
AEC-0000865ycaMCDSforward10003801001810Downstream
AEC-0000866ycaNCDScomplement10018111002719Downstream
AEC-0000867ycaKCDSforward10028191003409Downstream
AEC-0000868pflACDScomplement10034911004231Matches
AEC-0000869pflBCDScomplement10044231006705Upstream
AEC-0000870focACDScomplement10067601007617Upstream
AEC-0000871ycaOCDScomplement10080231009783Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948