Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000870 (focA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000870 showshow history
Names
focA ECDH10B_0974
Product
formate transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1006760 1007617 858 286
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000292 (IPR000292 Formate/nitrite transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name focA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003073
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0974 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product formate transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR000292 Formate/nitrite transporter Protein Sequence Similarity - InterPro Domain: IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003073 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003073
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000292
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001510 focA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001417 focA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019603 focA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002216 focA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004638 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007976 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000923 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005578 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000852 focA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008564 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007972 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007221 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077134 focA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009404 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008445 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000944 focA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005446 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002208 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009768 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008817 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010320 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010233 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005905 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008836 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009657 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008924 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009313 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008547 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009103 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007638 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025068 focA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007163 focA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005689 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003073 focA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000913 focA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000988 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002216 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130901 focA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005669 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000978 focA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062860 focA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001495 focA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001865 focA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001996 focA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005157 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002090 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001102 focA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005311 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002981 focA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002883 focA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007950 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005436 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004794 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007390 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005375 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004584 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005376 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007911 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001836 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001824 focA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005664 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005682 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005176 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006198 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107200 focA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083674 focA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093465 focA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008491 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009057 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008759 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002429 focA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007835 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007157 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002713 focA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071991 focA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087252 focA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000957 focA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000973 focA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001429 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004653 focA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001322 focA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000976 focA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000626 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237067 focA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006060 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000830 focA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005504 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002004 focA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119923 focA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006261 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004533 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008315 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005076 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032528 focA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005227 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003113 focA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002770 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005887 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006573 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001481 focA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001795 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003170 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1001760 to 1012617
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000865ycaMCDSforward10003801001810Downstream
AEC-0000866ycaNCDScomplement10018111002719Downstream
AEC-0000867ycaKCDSforward10028191003409Downstream
AEC-0000868pflACDScomplement10034911004231Downstream
AEC-0000869pflBCDScomplement10044231006705Downstream
AEC-0000870focACDScomplement10067601007617Matches
AEC-0000871ycaOCDScomplement10080231009783Upstream
AEC-0000872ycaPCDSforward10099131010605Upstream
AEC-0000873serCCDSforward10108041011892Upstream
AEC-0000874aroACDSforward10119631013246Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948