Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000873 (serC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000873 showshow history
Names
serC ECDH10B_0977
Product
3-phosphoserine/phosphohydroxythreonine aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1010804 1011892 1089 363
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR003248 (IPR003248 (DEPRECATED) Phosphoserine aminotransferase, subgroup) Jul 2009
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR015422 (IPR015422 Pyridoxal phosphate-dependent transferase, small domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003248
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name serC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003093
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0977 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-phosphoserine/phosphohydroxythreonine aminotransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003248 (DEPRECATED) Phosphoserine aminotransferase, subgroup Protein Sequence Similarity - InterPro Domain: IPR003248
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015422 Pyridoxal phosphate-dependent transferase, small domain Protein Sequence Similarity - InterPro Domain: IPR015422
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003093 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003093
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003248
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000241 serC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000196 serC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046565 serC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002214 serC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004634 serC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007979 serC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000926 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005575 serC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000855 serC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008561 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007969 serC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007218 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077137 serC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009401 serC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008442 serC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000947 serC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005449 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002211 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009771 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008820 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010323 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005908 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008833 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009660 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008927 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009316 serC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008544 serC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009100 serC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007641 serC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025071 serC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007167 serC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005692 serC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003093 serC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000916 serC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000991 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002213 serC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130904 serC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005672 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000981 serC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062858 serC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001592 serC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000682 serC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001993 serC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005160 serC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002087 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001105 serC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005314 serC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002991 serC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002893 serC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007947 serC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005439 serC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004797 serC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007393 serC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005379 serC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004588 serC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005379 serC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007914 serC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001833 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001821 serC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002552 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005667 serC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005679 serC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005179 serC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006201 serC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107205 serC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083671 serC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093486 serC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008487 serC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009053 serC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008762 serC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002432 serC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007832 serC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007160 serC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002710 serC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071994 serC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087255 serC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000960 serC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000976 serC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001426 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004668 serC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001326 serC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000973 serC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000629 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237057 serC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006065 serC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000838 serC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005509 serC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002009 serC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119941 serC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006266 serC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004528 serC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002110 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008310 serC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005071 serC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032523 serC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005222 serC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003105 serC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002762 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005881 serC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006568 serC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001486 serC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001803 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003162 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1005804 to 1016892
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000869pflBCDScomplement10044231006705Upstream
AEC-0000870focACDScomplement10067601007617Upstream
AEC-0000871ycaOCDScomplement10080231009783Upstream
AEC-0000872ycaPCDSforward10099131010605Upstream
AEC-0000873serCCDSforward10108041011892Matches
AEC-0000874aroACDSforward10119631013246Downstream
AEC-0000875ycaLCDSforward10134151014179Downstream
AEC-0000876cmkCDSforward10143521015035Downstream
AEC-0000877rpsACDSforward10151461016819Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948