Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000880 (msbA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000880 showshow history
Names
msbA ECDH10B_0984
Product
fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1019772 1021520 1749 583
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011527 (IPR011527 ABC transporter type 1, transmembrane domain) Jul 2009
Automated Process Approved IPR011917 (IPR011917 ABC transporter, lipid A-core flippase, MsbA) Jul 2009
Automated Process Approved IPR001140 (IPR001140 (DEPRECATED) ABC transporter, transmembrane domain) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006869 lipid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name msbA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003113
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0984 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011917 ABC transporter, lipid A-core flippase, MsbA Protein Sequence Similarity - InterPro Domain: IPR011917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011527 ABC transporter type 1, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001140 (DEPRECATED) ABC transporter, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR001140
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003113 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003113
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006869 lipid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011527
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000296 msbA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000210 msbA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019397 msbA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002208 msbA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004628 msbA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007986 msbA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000933 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005568 msbA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000862 msbA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008552 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007962 msbA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007210 MsbA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077146 msbA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009394 msbA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008435 msbA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000954 msbA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005456 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003639 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009778 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008827 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010641 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009279 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005915 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008826 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009670 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008934 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009324 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008537 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009093 msbA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007648 msbA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025078 msbA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007174 msbA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005699 msbA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003113 msbA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000923 msbA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000998 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002205 msbA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130911 msbA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005679 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000988 msbA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062821 msbA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001557 msbA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003931 msbA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001956 msbA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005168 msbA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002077 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001117 msbA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005322 msbA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003020 msbA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002921 msbA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007940 msbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005446 msbA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007437 msbA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007400 msbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007712 msbA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004597 msbA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005386 msbA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007921 msbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001826 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001814 msbA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002543 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005675 msbA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008111 msbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005187 msbA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006379 msbA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107220 msbA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083664 msbA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093511 msbA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008480 msbA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008264 msbA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008975 msbA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002442 msbA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007822 msbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003701 msbA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002698 msbA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072003 msbA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0255943 msbA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000969 msbA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000985 msbA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001420 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004692 msbA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001333 msbA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000967 msbA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000635 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237033 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006072 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000844 msbA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005515 msbA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002015 msbA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119973 msbA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006272 msbA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004522 msbA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002102 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008304 msbA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005065 msbA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032516 msbA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005216 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003098 msbA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002755 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005875 msbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006562 msbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001492 msbA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001810 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003155 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1014772 to 1026520
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000876cmkCDSforward10143521015035Upstream
AEC-0000877rpsACDSforward10151461016819Upstream
AEC-0000878ihfBCDSforward10169791017263Upstream
AEC-0000879ycaICDSforward10174711019735Upstream
AEC-0000880msbACDSforward10197721021520Matches
AEC-0004433lpxKCDSforward10215171022503Overlaps Downstream
AEC-0000881ycaQCDSforward10225401023772Downstream
AEC-0000882ycaRCDSforward10238241024006Downstream
AEC-0000883kdsBCDSforward10240031024749Downstream
AEC-0000884ycbJCDSforward10249031025796Downstream
AEC-0000885ycbCCDScomplement10257731026552Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948