Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000883 (kdsB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000883 showshow history
Names
kdsB ECDH10B_0988
Product
3-deoxy-manno-octulosonate cytidylyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1024003 1024749 747 249
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004528 (IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase) Jul 2009
Automated Process Approved IPR003329 (IPR003329 Acylneuraminate cytidylyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name kdsB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003122
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0988 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-deoxy-manno-octulosonate cytidylyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003329 Acylneuraminate cytidylyltransferase Protein Sequence Similarity - InterPro Domain: IPR003329
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003122 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003122
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004528
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000481 kdsB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000491 kdsB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019394 kdsB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002205 kdsB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004624 kdsB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007990 kdsB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000937 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005564 kdsB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000866 kdsB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008548 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007957 kdsB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007206 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077151 kdsB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009390 kdsB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008430 kdsB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000958 kdsB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005460 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003643 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009782 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008831 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010645 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009283 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005919 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008822 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009674 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008938 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009328 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008533 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009089 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007652 kdsB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025082 kdsB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007178 kdsB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005703 kdsB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003122 kdsB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000927 kdsB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001002 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002201 kdsB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130915 kdsB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005683 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000992 kdsB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062818 kdsB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001559 kdsB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001856 kdsB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001953 kdsB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005172 kdsB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002073 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001121 kdsB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005326 kdsB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003034 kdsB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002935 kdsB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007936 kdsB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005450 kdsB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007441 kdsB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007404 kdsB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007716 kdsB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004601 kdsB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005390 kdsB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007925 kdsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001822 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001810 kdsB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002539 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005679 kdsB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008107 kdsB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005191 kdsB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006383 kdsB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107226 kdsB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083660 kdsB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093523 kdsB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008476 kdsB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008260 kdsB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008979 kdsB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002446 kdsB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007818 kdsB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003697 kdsB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002694 kdsB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072007 kdsB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087266 kdsB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000973 kdsB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000989 kdsB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001415 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004710 kdsB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001339 kdsB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000961 kdsB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000640 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237024 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006078 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000853 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005521 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002020 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119991 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006278 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004516 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002097 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008297 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005059 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032511 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005210 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003093 kdsB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002750 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005866 kdsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006556 kdsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001497 kdsB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001816 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003150 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1019003 to 1029749
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000879ycaICDSforward10174711019735Upstream
AEC-0000880msbACDSforward10197721021520Upstream
AEC-0004433lpxKCDSforward10215171022503Upstream
AEC-0000881ycaQCDSforward10225401023772Upstream
AEC-0000882ycaRCDSforward10238241024006Overlaps Upstream
AEC-0000883kdsBCDSforward10240031024749Matches
AEC-0000884ycbJCDSforward10249031025796Downstream
AEC-0000885ycbCCDScomplement10257731026552Downstream
AEC-0000886smtACDSforward10266881027473Downstream
AEC-0000887mukFCDSforward10274701028792Downstream
AEC-0000888mukECDSforward10287731029477Downstream
AEC-0000889mukBCDSforward10294771033937Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948