Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000893 (aspC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000893 showshow history
Names
aspC ECDH10B_0998
Product
aspartate aminotransferase, PLP-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1037670 1038860 1191 397
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR000796 (IPR000796 Aspartate/other aminotransferase) Jul 2009
Automated Process Approved IPR004839 (IPR004839 Aminotransferase, class I/classII) Jul 2009
Automated Process Approved IPR004838 (IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aspC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003150
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0998 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aspartate aminotransferase, PLP-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000796 Aspartate/other aminotransferase Protein Sequence Similarity - InterPro Domain: IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Protein Sequence Similarity - InterPro Domain: IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004839 Aminotransferase, class I/classII Protein Sequence Similarity - InterPro Domain: IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003150 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003150
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016769 transferase activity, transferring nitrogenous groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004839
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004838
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000796
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000679 aspC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000727 aspC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020073 aspC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002195 aspC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004612 aspC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008000 aspC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000947 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005554 aspC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000876 aspC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008535 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007946 aspC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007196 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077162 aspC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008418 aspC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000968 aspC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005471 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004457 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009792 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008841 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010498 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009293 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005929 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008812 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008948 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009338 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008523 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010628 aspC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007662 aspC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025092 aspC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007188 aspC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005714 aspC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003150 aspC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000937 aspC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001012 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002191 aspC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130925 aspC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005694 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001003 aspC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062807 aspC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001486 aspC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003925 aspC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003919 aspC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005182 aspC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002060 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001132 aspC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005336 aspC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003062 aspC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002963 aspC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008970 aspC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005460 aspC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007451 aspC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007415 aspC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007726 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004611 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005400 aspC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007935 aspC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001812 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001800 aspC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005689 aspC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008097 aspC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005202 aspC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006394 aspC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107239 aspC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083650 aspC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093552 aspC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008466 aspC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008250 aspC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008989 aspC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002462 aspC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007802 aspC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007167 aspC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002682 aspC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072021 aspC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087277 aspC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000985 aspC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001001 aspC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003245 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004739 aspC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001351 aspC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000950 aspC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000651 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237007 aspC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006090 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000865 aspC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005532 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002030 aspC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120011 aspC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004505 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002665 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008285 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005048 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032498 aspC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005198 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003081 aspC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002738 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005854 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006545 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001506 aspC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001827 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003138 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1032670 to 1043860
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000889mukBCDSforward10294771033937Downstream
AEC-0000890ycbBCDSforward10341981036045Downstream
AEC-0000891ycbKCDSforward10362261036774Downstream
AEC-0000892ycbLCDSforward10368011037448Downstream
AEC-0000893aspCCDScomplement10376701038860Matches
AEC-0000894ompFCDScomplement10390451040133Upstream
AEC-0000895asnSCDScomplement10407361042136Upstream
AEC-0000896pncBCDScomplement10423051043507Upstream
AEC-0000897pepNCDSforward10437731046385Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948