Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000894 (ompF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000894 showshow history
Names
ompF ECDH10B_0999
Product
outer membrane porin 1a (Ia;b;F)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1039045 1040133 1089 363
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Jul 2009
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Jul 2009
Automated Process Approved IPR013793 (IPR013793 Porin, Gram-negative type, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003153
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0999 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane porin 1a (Ia;b;F) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013793 Porin, Gram-negative type, conserved site Protein Sequence Similarity - InterPro Domain: IPR013793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003153 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003153
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003372 ompF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003213 ompF CDS
Ortholog
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129629 ompF CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104470 ompF CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020081 ompF CDS
Person Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002194 ompF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004611 ompF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008001 ompF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000948 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005553 ompF CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000877 ompF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008533 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007945 ompF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007195 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077163 ompF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010513 ompF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008417 ompF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000969 ompF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005473 ompF CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004455 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009793 ompF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008842 ompF CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0010497 ompF CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009294 ompF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005930 ompF CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008811 ompF CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0008949 ompF CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009339 ompF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008522 ompF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007663 ompF CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025093 ompF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007189 ompF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005715 ompF CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0003153 ompF CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0000938 ompF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001013 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002190 ompF CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0130926 ompF CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005696 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001004 ompF CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062806 ompN CDS
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001487 ompN CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003927 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003918 ompN CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0140774 ompN CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001133 ompF CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001799 ompF CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0107241 ompF CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083649 ompF CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093555 ompF CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0002463 ompF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007801 ompF CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007169 ompF CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0002681 ompF CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0072022 ompF CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0087278 ompF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000986 ompF CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0001002 ompF CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003244 CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0004749 ompF CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001352 ompF CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000949 ompF CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000652 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237005 ompF CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002031 ompF CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120014 ompF CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032497 ompF CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003079 ompF CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002736 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006544 ompF CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001507 ompF CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1034045 to 1045133
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000890ycbBCDSforward10341981036045Downstream
AEC-0000891ycbKCDSforward10362261036774Downstream
AEC-0000892ycbLCDSforward10368011037448Downstream
AEC-0000893aspCCDScomplement10376701038860Downstream
AEC-0000894ompFCDScomplement10390451040133Matches
AEC-0000895asnSCDScomplement10407361042136Upstream
AEC-0000896pncBCDScomplement10423051043507Upstream
AEC-0000897pepNCDSforward10437731046385Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948