Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000895 (asnS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000895 showshow history
Names
asnS ECDH10B_1000
Product
asparaginyl tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1040736 1042136 1401 467
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016027 (IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like) Jul 2009
Automated Process Approved IPR004522 (IPR004522 Asparagine-tRNA ligase) Jul 2009
Automated Process Approved IPR004365 (IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type) Jul 2009
Automated Process Approved IPR004364 (IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N)) Jul 2009
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Jul 2009
Automated Process Approved IPR002312 (IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb) Jul 2009
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006421 asparaginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004816 asparagine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name asnS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003162
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1000 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product asparaginyl tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016027 (DEPRECATED) Nucleic acid-binding, OB-fold-like Protein Sequence Similarity - InterPro Domain: IPR016027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Protein Sequence Similarity - InterPro Domain: IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Protein Sequence Similarity - InterPro Domain: IPR004364
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Protein Sequence Similarity - InterPro Domain: IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004522 Asparagine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR004522
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003162 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003162
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006421 asparaginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006422 aspartyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004816 asparagine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004522
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003676 nucleic acid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004365
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004815 aspartate-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000319 asnS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000302 asnS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020082 asnS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002193 asnS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004610 asnS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008003 asnS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000949 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005552 asnS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000878 asnS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008532 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007943 asnS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007194 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077164 asnS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010511 asnS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008415 asnS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000970 asnS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005474 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004454 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009794 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008843 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010496 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009295 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005931 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008810 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009689 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008950 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009340 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008521 asnS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007664 asnS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025094 asnS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007190 asnS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005716 asnS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003162 asnS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000939 asnS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001015 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002189 asnS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130927 asnS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005697 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001005 asnS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062805 asnS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001488 asnS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001851 asnS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003917 asnS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005186 asnS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002054 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001134 asnS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005340 asnS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003069 asnS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002970 asnS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008974 asnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005464 asnS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007456 asnS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007418 asnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007729 asnS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004614 asnS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005404 asnS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007939 asnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001810 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001798 asnS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002524 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005693 asnS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008093 asnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005206 asnS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006398 asnS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107243 asnS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083648 asnS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093568 asnS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008463 asnS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008247 asnS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007526 asnS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002464 asnS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007800 asnS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007170 asnS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002680 asnS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072023 asnS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087279 asnS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000987 asnS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001003 asnS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003243 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004755 asnS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001353 asnC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000948 asnS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000653 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237004 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006093 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000869 asnS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005534 asnS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002032 asnS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120017 asnS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004503 asnS CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008283 asnS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005046 asnS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032496 asnS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005196 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003078 asnS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002735 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005851 asnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006543 asnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001508 asnS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001830 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003135 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1035736 to 1047136
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000890ycbBCDSforward10341981036045Downstream
AEC-0000891ycbKCDSforward10362261036774Downstream
AEC-0000892ycbLCDSforward10368011037448Downstream
AEC-0000893aspCCDScomplement10376701038860Downstream
AEC-0000894ompFCDScomplement10390451040133Downstream
AEC-0000895asnSCDScomplement10407361042136Matches
AEC-0000896pncBCDScomplement10423051043507Upstream
AEC-0000897pepNCDSforward10437731046385Upstream
AEC-0000898ssuBCDScomplement10464281047195Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948