Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000898 (ssuB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000898 showshow history
Names
ssuB ECDH10B_1003
Product
alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1046428 1047195 768 256
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003173
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1003 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003173 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003173
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002501 ssuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002435 ssuB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019870 ssuB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002190 ssuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008006 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000953 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005548 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000881 ssuB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008529 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007938 ssuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007190 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077168 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010506 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008410 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000973 ssuB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005479 ssuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004451 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009798 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008847 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010492 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009299 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005935 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008806 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009695 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008954 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009343 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008517 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010500 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007668 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025097 ssuB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007193 ssuB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005720 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003173 ssuB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000942 ssuB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001019 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002185 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130930 ssuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005700 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001008 ycbE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064751 ssuB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002604 ssuB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001194 ssuB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000795 ssuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007173 ssuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002677 ycbE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072027 ycbE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087282 ycbE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000990 ycbE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001006 ycbE CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243727 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005345 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004344 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008250 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003836 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127463 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008510 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007872 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000636 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006653 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006735 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029832 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006346 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004257 ssuB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000272 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008264 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004295 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003714 ssuB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004520 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000491 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1041428 to 1052195
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000895asnSCDScomplement10407361042136Downstream
AEC-0000896pncBCDScomplement10423051043507Downstream
AEC-0000897pepNCDSforward10437731046385Downstream
AEC-0000898ssuBCDScomplement10464281047195Matches
AEC-0000899ssuCCDScomplement10471921047983Overlaps Upstream
AEC-0000900ssuDCDScomplement10479941049139Upstream
AEC-0000901ssuACDScomplement10491361050095Upstream
AEC-0000902ssuECDScomplement10500881050663Upstream
AEC-0000903ycbQCDSforward10510191051558Upstream
AEC-0000904ycbRCDSforward10516411052342Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948