Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000899 (ssuC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000899 showshow history
Names
ssuC ECDH10B_1004
Product
alkanesulfonate transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1047192 1047983 792 264
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003175
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1004 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alkanesulfonate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003175 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003175
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002534 ssuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002415 ssuC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019871 ssuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002189 ssuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008007 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000954 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005547 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000882 ssuC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008528 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007937 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007189 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077169 ssuC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010505 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008409 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000974 ssuC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005480 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004450 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009799 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008848 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010491 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009300 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005936 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008805 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009696 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008955 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009344 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008516 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010501 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007669 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025098 ssuC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007194 ssuC_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005721 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003175 ssuC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000943 ssuC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001020 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002184 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130931 ssuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005701 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001009 ycbM CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064750 ssuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002605 ssuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000794 ssuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007174 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002676 ycbM CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087283 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000991 ycbM CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001007 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243728 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004343 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008249 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003837 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127454 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008509 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007871 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000637 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006652 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006734 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029833 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006345 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004258 ssuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000271 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008263 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004294 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003715 ssuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004521 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000490 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1042192 to 1052983
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000896pncBCDScomplement10423051043507Downstream
AEC-0000897pepNCDSforward10437731046385Downstream
AEC-0000898ssuBCDScomplement10464281047195Overlaps Downstream
AEC-0000899ssuCCDScomplement10471921047983Matches
AEC-0000900ssuDCDScomplement10479941049139Upstream
AEC-0000901ssuACDScomplement10491361050095Upstream
AEC-0000902ssuECDScomplement10500881050663Upstream
AEC-0000903ycbQCDSforward10510191051558Upstream
AEC-0000904ycbRCDSforward10516411052342Upstream
AEC-0000905ycbSCDSforward10523671054967Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948