Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000900 (ssuD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000900 showshow history
Names
ssuD ECDH10B_1005
Product
alkanesulfonate monooxygenase, FMNH(2)-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1047994 1049139 1146 382
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011251 (IPR011251 Luciferase-like domain) Jul 2009
Automated Process Approved IPR016048 (IPR016048 (DEPRECATED) Luciferase-like, subgroup) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003178
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1005 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alkanesulfonate monooxygenase, FMNH(2)-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011251 Luciferase-like domain Protein Sequence Similarity - InterPro Domain: IPR011251
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016048 (DEPRECATED) Luciferase-like, subgroup Protein Sequence Similarity - InterPro Domain: IPR016048
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003178 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003178
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002238 ssuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002052 ssuD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019873 ssuD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002188 ssuD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008008 ssuD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000955 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005546 ssuD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000883 ssuD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008527 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007936 ssuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007188 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077170 ssuD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010504 ssuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008408 ssuD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000975 ssuD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005481 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004449 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009800 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008849 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010490 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009301 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005937 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008804 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009697 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008956 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009345 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008515 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010502 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007670 ssuD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025099 ssuD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007195 ssuD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005722 ssuD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003178 ssuD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000944 ssuD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001021 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002183 ssuD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130932 ssuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005702 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001010 ycbN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064749 ssuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002606 ssuD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000793 ssuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007175 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072032 ycbN CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087286 ycbN CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000995 ycbN CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243736 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004342 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003838 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127453 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008508 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007870 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000638 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006651 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006733 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029834 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006344 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004259 ssuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000270 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008262 ssuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004293 ssuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003716 ssuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004522 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000489 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1042994 to 1054139
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000896pncBCDScomplement10423051043507Downstream
AEC-0000897pepNCDSforward10437731046385Downstream
AEC-0000898ssuBCDScomplement10464281047195Downstream
AEC-0000899ssuCCDScomplement10471921047983Downstream
AEC-0000900ssuDCDScomplement10479941049139Matches
AEC-0000901ssuACDScomplement10491361050095Overlaps Upstream
AEC-0000902ssuECDScomplement10500881050663Upstream
AEC-0000903ycbQCDSforward10510191051558Upstream
AEC-0000904ycbRCDSforward10516411052342Upstream
AEC-0000905ycbSCDSforward10523671054967Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948