Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000901 (ssuA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000901 showshow history
Names
ssuA ECDH10B_1006
Product
alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1049136 1050095 960 320
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010067 (IPR010067 Aliphatic sulfonates-binding protein) Jul 2009
Automated Process Approved IPR015168 (IPR015168 SsuA/THI5-like) Jul 2009
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006790 sulfur compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ssuA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003180
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1006 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010067 Aliphatic sulfonates-binding protein Protein Sequence Similarity - InterPro Domain: IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015168 SsuA/THI5-like Protein Sequence Similarity - InterPro Domain: IPR015168
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003180 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003180
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006790 sulfur compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002537 ssuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002498 ssuA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019874 ssuA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002187 ssuA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008009 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000956 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005545 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000884 ssuA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008525 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007935 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007187 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077171 ssuA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010503 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008407 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000976 ssuA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005495 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004448 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009801 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008850 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010489 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009302 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005938 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008803 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008957 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009346 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008514 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007671 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025100 ssuA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007196 ssuA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005723 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003180 ssuA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000945 ssuA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001022 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002182 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130933 ssuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005703 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001011 ycbO CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064748 ssuA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004220 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003004 ssuA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000792 ssuA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002470 ycbO CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007794 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007176 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002673 ycbO CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072033 ycbO CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087287 ycbO CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000996 ycbO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001009 ycbO CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004340 ssuA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008246 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003839 ssuA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127452 ssuA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008507 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007869 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000639 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006650 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006732 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029835 ssuA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006343 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004260 ssuA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000268 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008261 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004292 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003717 ssuA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004523 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000487 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1044136 to 1055095
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000897pepNCDSforward10437731046385Downstream
AEC-0000898ssuBCDScomplement10464281047195Downstream
AEC-0000899ssuCCDScomplement10471921047983Downstream
AEC-0000900ssuDCDScomplement10479941049139Overlaps Downstream
AEC-0000901ssuACDScomplement10491361050095Matches
AEC-0000902ssuECDScomplement10500881050663Overlaps Upstream
AEC-0000903ycbQCDSforward10510191051558Upstream
AEC-0000904ycbRCDSforward10516411052342Upstream
AEC-0000905ycbSCDSforward10523671054967Upstream
AEC-0000906ycbTCDSforward10549581056028Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948