Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000918 (fabA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000918 showshow history
Names
fabA ECDH10B_1024
Product
beta-hydroxydecanoyl thioester dehydrase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1069103 1069621 519 173
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000794 (IPR000794 Beta-ketoacyl synthase) Jul 2009
Automated Process Approved IPR010083 (IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA) Jul 2009
Automated Process Approved IPR013114 (IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003229
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1024 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product beta-hydroxydecanoyl thioester dehydrase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR000794 Beta-ketoacyl synthase Protein Sequence Similarity - InterPro Domain: IPR000794
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA Protein Sequence Similarity - InterPro Domain: IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Protein Sequence Similarity - InterPro Domain: IPR013114
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003229 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003229
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000794
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008693 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010083
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001691 fabA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019707 fabA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002175 fabA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004597 fabA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000967 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005526 fabA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000894 fabA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008500 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077183 fabA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000987 fabA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005512 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000011 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009823 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008870 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005958 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009723 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010894 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011096 fabA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007690 fabA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025119 fabA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005741 fabA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003229 fabA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000963 fabA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001040 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002165 fabA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130952 fabA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005725 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001022 fabA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062006 fabA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001149 fabA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001646 fabA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005203 fabA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002039 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001214 fabA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005415 fabA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003148 fabA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003029 fabA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009045 fabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005540 fabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007532 fabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007746 fabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004630 fabA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005477 fabA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008739 fabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001795 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001783 fabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002504 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005710 fabA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009380 fabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005218 fabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006410 fabA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107348 fabA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083567 fabA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093762 fabA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008391 fabA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008173 fabA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007598 fabA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002521 fabA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007774 fabA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001045 fabA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072056 fabA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087306 fabA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001020 fabA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001029 fabA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003018 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004802 fabA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001366 fabA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000935 fabA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000666 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236268 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006055 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000886 fabA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005552 fabA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001958 fabA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120082 fabA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008474 fabA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004487 fabA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005027 fabA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032476 fabA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005179 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003060 fabA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001845 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005835 fabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006531 fabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001522 fabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001849 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003120 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1064103 to 1074621
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000913uupCDSforward10631151065022Downstream
AEC-0000914pqiACDSforward10651521066405Downstream
AEC-0000915pqiBCDSforward10664101068050Downstream
AEC-0000916ymbACDSforward10680471068610Downstream
AEC-0000917rmfCDSforward10688661069033Downstream
AEC-0000918fabACDScomplement10691031069621Matches
AEC-0000919ycbZCDScomplement10696901071450Upstream
AEC-0000920ycbGCDSforward10716361072088Upstream
AEC-0000921ompACDScomplement10721641073204Upstream
AEC-0000922sulACDScomplement10735611074070Upstream
AEC-0000923sxyCDSforward10742891074918Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948