Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000921 (ompA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000921 showshow history
Names
ompA ECDH10B_1027
Product
outer membrane protein A (3a;II*;G;d)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1072164 1073204 1041 347
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006665 (IPR006665 OmpA-like domain) Jul 2009
Automated Process Approved IPR000498 (IPR000498 Outer membrane protein OmpA-like, transmembrane domain) Jul 2009
Automated Process Approved IPR002368 (IPR002368 Outer membrane protein, OmpA) Jul 2009
Automated Process Approved IPR006664 (IPR006664 Outer membrane protein, bacterial) Jul 2009
Automated Process Approved IPR006690 (IPR006690 Outer membrane protein, OmpA-like, conserved site) Jul 2009
Automated Process Approved IPR011250 (IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006665
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000498
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003240
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1027 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane protein A (3a;II*;G;d) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002368 Outer membrane protein, OmpA Protein Sequence Similarity - InterPro Domain: IPR002368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006664 Outer membrane protein, bacterial Protein Sequence Similarity - InterPro Domain: IPR006664
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006690 Outer membrane protein, OmpA-like, conserved site Protein Sequence Similarity - InterPro Domain: IPR006690
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR011250
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000498 Outer membrane protein OmpA-like, transmembrane domain Protein Sequence Similarity - InterPro Domain: IPR000498
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006665 OmpA-like domain Protein Sequence Similarity - InterPro Domain: IPR006665
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003240 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003240
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000498
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006665
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005198 structural molecule activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002368
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001903 ompA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001620 ompA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018822 ompA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002172 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004594 ompA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000970 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005523 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000897 ompA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008496 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077186 ompA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000990 ompA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005515 ompA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000014 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009826 ompA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008873 ompA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007478 ompA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005961 ompA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025122 ompA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005744 ompA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003240 ompA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000966 ompA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001043 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002162 ompA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130955 ompA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005728 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001025 ompA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062009 ompA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004026 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003789 ompA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005206 ompA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002034 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001217 ompA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005418 ompA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003154 ompA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003035 ompA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005543 ompA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007535 ompA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007751 ompA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004633 ompA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005480 ompA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008742 ompA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001792 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001780 ompA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002501 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005713 ompA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007802 ompA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005221 ompA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006413 ompA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107352 ompA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083564 ompA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093772 ompA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008388 ompA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008035 ompA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002518 ompA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007771 ompA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001048 ompA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072059 ompA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087309 ompA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001023 ompA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001032 ompA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003021 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004806 con CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001369 con CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000932 ompA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000669 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237446 ompA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007319 ompA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000890 ompA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005556 ompA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001954 ompA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120089 ompA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008470 ompA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004483 ompA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009599 ompA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005023 ompA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032470 ompA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005175 ompA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003055 ompA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001840 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008646 ompA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006527 ompA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001525 ompA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001852 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003115 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1067164 to 1078204
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000915pqiBCDSforward10664101068050Downstream
AEC-0000916ymbACDSforward10680471068610Downstream
AEC-0000917rmfCDSforward10688661069033Downstream
AEC-0000918fabACDScomplement10691031069621Downstream
AEC-0000919ycbZCDScomplement10696901071450Downstream
AEC-0000920ycbGCDSforward10716361072088Downstream
AEC-0000921ompACDScomplement10721641073204Matches
AEC-0000922sulACDScomplement10735611074070Upstream
AEC-0000923sxyCDSforward10742891074918Upstream
AEC-0000924yccSCDScomplement10748811077034Upstream
AEC-0000925yccFCDScomplement10770531077499Upstream
AEC-0000926helDCDSforward10776221079676Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948