Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000958 (torC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000958 showshow history
Names
torC ECDH10B_1068
Product
trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1111235 1112407 1173 391
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009056 (IPR009056 Cytochrome c-like domain) Jul 2009
Automated Process Approved IPR009154 (IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK) Jul 2009
Automated Process Approved IPR005126 (IPR005126 NapC/NirT cytochrome c, N-terminal) Jul 2009
Automated Process Approved IPR011031 (IPR011031 Multihaem cytochrome) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name torC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003370
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1068 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009056 Cytochrome c-like domain Protein Sequence Similarity - InterPro Domain: IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK Protein Sequence Similarity - InterPro Domain: IPR009154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005126 NapC/NirT cytochrome c, N-terminal Protein Sequence Similarity - InterPro Domain: IPR005126
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011031 Multihaem cytochrome Protein Sequence Similarity - InterPro Domain: IPR011031
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003370 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003370
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009056
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003073 torC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003328 torC CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003615 torC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007287 torC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001003 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005484 torC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000924 torC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008444 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008009 torC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007120 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077226 torC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009455 torC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008291 torC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001097 torC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005556 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005071 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009939 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008979 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007584 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005568 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006072 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006342 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009840 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006273 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006927 torC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008804 torC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008349 torC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007805 torC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025226 torC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007465 torC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005784 torC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003370 torC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001007 torC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001084 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002127 torC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131072 torC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003466 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001063 torC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008218 torC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004007 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004374 torC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008458 torC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011977 torC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011032 torC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005037 torC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008513 torC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005863 torC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005937 torC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007689 torC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007607 torC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008461 torC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006391 torC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003710 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003672 torC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004778 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008634 torC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004354 torC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008102 torC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004911 torC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085421 torC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101806 torC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005381 torC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004803 torC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006629 torC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002479 torC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004896 torC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072105 torC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087350 torC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001066 torC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001078 torC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1106235 to 1117407
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000954yccMCDScomplement11054401106513Upstream
AEC-0000955torSCDScomplement11065851109329Upstream
AEC-0000956torTCDSforward11094121110440Upstream
AEC-0000957torRCDScomplement11104131111105Upstream
AEC-0000958torCCDSforward11112351112407Matches
AEC-0000959torACDSforward11124071114953Overlaps Downstream
AEC-0004436torDCDSforward11149501115549Downstream
AEC-0000960cbpMCDScomplement11157011116006Downstream
AEC-0000961cbpACDScomplement11160061116926Downstream
AEC-0000962yccECDSforward11171871118443Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948