Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000959 (torA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000959 showshow history
Names
torA ECDH10B_1069
Product
trimethylamine N-oxide (TMAO) reductase I, catalytic subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1112407 1114953 2547 849
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Jul 2009
Automated Process Approved IPR011887 (IPR011887 Trimethylamine-N-oxide reductase TorA) Jul 2009
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Jul 2009
Automated Process Approved IPR006658 (IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase) Jul 2009
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Jul 2009
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Jul 2009
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name torA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003372
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1069 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product trimethylamine N-oxide (TMAO) reductase I, catalytic subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Protein Sequence Similarity - InterPro Domain: IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011887 Trimethylamine-N-oxide reductase TorA Protein Sequence Similarity - InterPro Domain: IPR011887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003372 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003372
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0042597 periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011887
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000020 torZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000023 torZ CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003372 torA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1107407 to 1119953
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000955torSCDScomplement11065851109329Upstream
AEC-0000956torTCDSforward11094121110440Upstream
AEC-0000957torRCDScomplement11104131111105Upstream
AEC-0000958torCCDSforward11112351112407Overlaps Upstream
AEC-0000959torACDSforward11124071114953Matches
AEC-0004436torDCDSforward11149501115549Overlaps Downstream
AEC-0000960cbpMCDScomplement11157011116006Downstream
AEC-0000961cbpACDScomplement11160061116926Downstream
AEC-0000962yccECDSforward11171871118443Downstream
AEC-0000963agpCDSforward11187361119977Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948