Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000963 (agp) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000963 showshow history
Names
agp ECDH10B_1074
Product
glucose-1-phosphatase/inositol phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1118736 1119977 1242 414
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000560 (IPR000560 Histidine phosphatase superfamily, clade-2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name agp Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003388
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1074 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glucose-1-phosphatase/inositol phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000560 Histidine phosphatase superfamily, clade-2 Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003388 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003388
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002603 agp CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002417 agp CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002156 agp CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003625 agp CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007281 agp CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001010 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000929 agp CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008436 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008016 agp CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007128 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009449 agp CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008298 agp CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001102 agp CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005563 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005078 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009947 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008987 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007592 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005561 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006080 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006349 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009848 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006281 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006935 agp CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008812 agp CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008357 agp CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007813 agp CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025233 agp CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007470 agp CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005792 agp CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003388 agp CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001013 agp CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001090 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002121 agp CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131079 agp CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003474 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001068 agp CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004282 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005254 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001971 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001268 agp CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005465 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003172 agp CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008466 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005591 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007584 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008012 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007798 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004681 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005581 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008787 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001745 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001733 agp CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002445 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005759 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007755 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005269 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006461 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107446 agp CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083517 agp CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093914 agp CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008337 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007985 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007829 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001100 agp CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072115 agp CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087356 agp CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001075 agp CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001087 agp CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0003870 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000673 agp CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001027 agp CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003519 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1113736 to 1124977
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000959torACDSforward11124071114953Upstream
AEC-0004436torDCDSforward11149501115549Upstream
AEC-0000960cbpMCDScomplement11157011116006Upstream
AEC-0000961cbpACDScomplement11160061116926Upstream
AEC-0000962yccECDSforward11171871118443Upstream
AEC-0000963agpCDSforward11187361119977Matches
AEC-0000964yccJCDScomplement11200151120242Downstream
AEC-0000965wrbACDScomplement11202631120859Downstream
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Downstream
AEC-0000967rutFCDScomplement11230111123505Downstream
AEC-0000968rutECDScomplement11235161124106Downstream
AEC-0000969rutDCDScomplement11241161124916Downstream
AEC-0000970rutCCDScomplement11249241125310Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948