Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000966 (rutG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000966 showshow history
Names
rutG ycdG ECDH10B_1078
Product
predicted pyrimidine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1121662 1122990 1329 443
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006042 (IPR006042 Xanthine/uracil permease) Jul 2009
Automated Process Approved IPR006043 (IPR006043 Xanthine/uracil/vitamin C permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rutG Published Annotation - PubMed ID: 16540542
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym ycdG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003401
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1078 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted pyrimidine transporter Published Sequence Analysis - PubMed ID: 16540542
Reference: Escherichia coli K-12 		Jan 2008
Protein Family
Automated Process Approved protein family IPR006042 Xanthine/uracil permease Protein Sequence Similarity - InterPro Domain: IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006043 Xanthine/uracil/vitamin C permease Protein Sequence Similarity - InterPro Domain: IPR006043
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003401 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003401
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006042
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003541 rutG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003430 rutG CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007277 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001014 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005474 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008432 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008020 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007132 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077237 rutG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009446 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008302 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001108 rutG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005567 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005081 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009950 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008990 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007595 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005558 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006083 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006352 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009851 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006284 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006938 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006404 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008360 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007816 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025310 ycdG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007474 rutG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005798 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003401 rutG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001017 ycdG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001094 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002118 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131180 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000614 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004865 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001103 ycdG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072119 ycdG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087359 ycdG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001079 ycdG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001100 ycdG CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005708 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1116662 to 1127990
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000961cbpACDScomplement11160061116926Downstream
AEC-0000962yccECDSforward11171871118443Downstream
AEC-0000963agpCDSforward11187361119977Downstream
AEC-0000964yccJCDScomplement11200151120242Downstream
AEC-0000965wrbACDScomplement11202631120859Downstream
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Matches
AEC-0000967rutFCDScomplement11230111123505Upstream
AEC-0000968rutECDScomplement11235161124106Upstream
AEC-0000969rutDCDScomplement11241161124916Upstream
AEC-0000970rutCCDScomplement11249241125310Upstream
AEC-0000971rutBCDScomplement11253221126014Upstream
AEC-0000972rutACDScomplement11260141127162Upstream
AEC-0000973rutRCDSforward11273931128031Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948