Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000967 (rutF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000967 showshow history
Names
rutF ECDH10B_1079
Product
predicted oxidoreductase, flavin:NADH component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1123011 1123505 495 165
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009002 (IPR009002 (DEPRECATED) FMN-binding split barrel-related) Jul 2009
Automated Process Approved IPR002563 (IPR002563 Flavin reductase like domain) Jul 2009
Automated Process Approved IPR012349 (IPR012349 FMN-binding split barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012349
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rutF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003403
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1079 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted oxidoreductase, flavin:NADH component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009002 (DEPRECATED) FMN-binding split barrel-related Protein Sequence Similarity - InterPro Domain: IPR009002
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012349 FMN-binding split barrel Protein Sequence Similarity - InterPro Domain: IPR012349
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002563 Flavin reductase like domain Protein Sequence Similarity - InterPro Domain: IPR002563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003403 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003403
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012349
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000421 rutF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001388 rutF CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007276 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001015 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005473 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000933 ycdH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008431 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008021 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007133 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077238 rutF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009445 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008303 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001109 rutF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005568 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005082 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009951 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008991 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007596 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005557 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006084 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006353 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009852 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006285 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006939 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006403 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008361 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007817 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025311 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007475 rutF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005799 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003403 rutF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001018 ycdH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001095 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002117 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131181 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000613 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001073 nmoB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062421 hpaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001248 hpaC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000550 hpaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003700 hpaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004864 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001104 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072120 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087360 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001080 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001101 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005713 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238147 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005753 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001384 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001647 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121194 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007207 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008329 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004082 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008037 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007091 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032265 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006238 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002830 hpaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001620 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006336 hpaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001720 hpaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002097 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002908 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1118011 to 1128505
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000962yccECDSforward11171871118443Downstream
AEC-0000963agpCDSforward11187361119977Downstream
AEC-0000964yccJCDScomplement11200151120242Downstream
AEC-0000965wrbACDScomplement11202631120859Downstream
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Downstream
AEC-0000967rutFCDScomplement11230111123505Matches
AEC-0000968rutECDScomplement11235161124106Upstream
AEC-0000969rutDCDScomplement11241161124916Upstream
AEC-0000970rutCCDScomplement11249241125310Upstream
AEC-0000971rutBCDScomplement11253221126014Upstream
AEC-0000972rutACDScomplement11260141127162Upstream
AEC-0000973rutRCDSforward11273931128031Upstream
AEC-0000974putACDScomplement11280711132033Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948