Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000968 (rutE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000968 showshow history
Names
rutE ycdI ECDH10B_1080
Product
predicted oxidoreductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1123516 1124106 591 197
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000415 (IPR000415 Nitroreductase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000415
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rutE Published Annotation - PubMed ID: 16540542
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym ycdI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003407
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1080 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted oxidoreductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000415 Nitroreductase-like Protein Sequence Similarity - InterPro Domain: IPR000415
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003407 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003407
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000415
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003485 rutE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003388 rutE CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007275 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001016 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005472 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000934 ycdI CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008430 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008022 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007134 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077239 rutE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009444 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008304 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001110 rutE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005569 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005083 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009952 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008992 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007597 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005556 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006085 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006354 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009853 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006286 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006940 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006402 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008362 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007818 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025312 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007476 rutE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005800 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003407 rutE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001019 ycdI CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001096 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002116 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131182 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000612 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001074 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004863 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001105 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072121 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087361 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001081 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001102 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005715 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1118516 to 1129106
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000963agpCDSforward11187361119977Downstream
AEC-0000964yccJCDScomplement11200151120242Downstream
AEC-0000965wrbACDScomplement11202631120859Downstream
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Downstream
AEC-0000967rutFCDScomplement11230111123505Downstream
AEC-0000968rutECDScomplement11235161124106Matches
AEC-0000969rutDCDScomplement11241161124916Upstream
AEC-0000970rutCCDScomplement11249241125310Upstream
AEC-0000971rutBCDScomplement11253221126014Upstream
AEC-0000972rutACDScomplement11260141127162Upstream
AEC-0000973rutRCDSforward11273931128031Upstream
AEC-0000974putACDScomplement11280711132033Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948