Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000969 (rutD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000969 showshow history
Names
rutD rarA ECDH10B_1081
Product
predicted hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1124116 1124916 801 267
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000073 (IPR000073 Alpha/beta hydrolase fold-1) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rutD Published Annotation - PubMed ID: 16540542
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym rarA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003410
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1081 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000073 Alpha/beta hydrolase fold-1 Protein Sequence Similarity - InterPro Domain: IPR000073
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003410 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003410
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003502 rutD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003431 rutD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007274 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001017 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005471 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000935 rarA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008429 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008023 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007135 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077240 rutD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009443 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008305 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001111 rutD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005570 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005084 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009953 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008993 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007598 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005555 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006086 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006355 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009854 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006287 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006941 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006401 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008363 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007819 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025313 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007477 rutD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005801 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003410 rutD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001020 rarA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001097 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002115 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131183 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000611 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001075 ycdJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004862 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001106 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072122 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087362 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001082 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001103 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005718 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1119116 to 1129916
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000963agpCDSforward11187361119977Downstream
AEC-0000964yccJCDScomplement11200151120242Downstream
AEC-0000965wrbACDScomplement11202631120859Downstream
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Downstream
AEC-0000967rutFCDScomplement11230111123505Downstream
AEC-0000968rutECDScomplement11235161124106Downstream
AEC-0000969rutDCDScomplement11241161124916Matches
AEC-0000970rutCCDScomplement11249241125310Upstream
AEC-0000971rutBCDScomplement11253221126014Upstream
AEC-0000972rutACDScomplement11260141127162Upstream
AEC-0000973rutRCDSforward11273931128031Upstream
AEC-0000974putACDScomplement11280711132033Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948