Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000972 (rutA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000972 showshow history
Names
rutA ycdM ECDH10B_1084
Product
predicted monooxygenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1126014 1127162 1149 383
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011251 (IPR011251 Luciferase-like domain) Jul 2009
Automated Process Approved IPR016048 (IPR016048 (DEPRECATED) Luciferase-like, subgroup) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rutA Published Annotation - PubMed ID: 16540542
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym ycdM Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003416
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1084 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted monooxygenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011251 Luciferase-like domain Protein Sequence Similarity - InterPro Domain: IPR011251
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016048 (DEPRECATED) Luciferase-like, subgroup Protein Sequence Similarity - InterPro Domain: IPR016048
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003416 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003416
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003377 rutA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003266 rutA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007271 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001020 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005468 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000938 ycdM CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008425 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008026 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007138 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077243 rutA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009440 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008308 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001114 rutA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005573 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005087 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009956 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008996 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007601 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005552 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006089 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006358 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009857 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006290 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006944 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006398 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008366 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007822 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025316 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007480 rutA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005804 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003416 rutA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001023 ycdM CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001100 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002112 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131186 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000608 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001078 ycdM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004859 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001109 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072125 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087365 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001085 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005726 ssuD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1121014 to 1132162
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004061ymdFCDSforward11212321121405Downstream
AEC-0000966rutGCDScomplement11216621122990Downstream
AEC-0000967rutFCDScomplement11230111123505Downstream
AEC-0000968rutECDScomplement11235161124106Downstream
AEC-0000969rutDCDScomplement11241161124916Downstream
AEC-0000970rutCCDScomplement11249241125310Downstream
AEC-0000971rutBCDScomplement11253221126014Overlaps Downstream
AEC-0000972rutACDScomplement11260141127162Matches
AEC-0000973rutRCDSforward11273931128031Upstream
AEC-0000974putACDScomplement11280711132033Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948