Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000975 (putP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000975 showshow history
Names
putP ECDH10B_1087
Product
proline:sodium symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1132456 1133964 1509 503
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Jul 2009
Automated Process Approved IPR011851 (IPR011851 Sodium/proline symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015824 proline transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name putP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003433
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1087 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product proline:sodium symporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011851 Sodium/proline symporter Protein Sequence Similarity - InterPro Domain: IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003433 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003433
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015824 proline transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005298 proline:sodium symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001266 putP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000696 putP CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014954 putP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001488 putP CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003645 putP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007266 putP CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001024 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005463 putP CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000941 putP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008422 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008031 putP CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007143 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077248 putP CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009435 putP CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008313 putP CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001117 putP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005578 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005092 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009961 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009000 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007606 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005547 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006093 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006362 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006295 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006949 putP CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006393 putP CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008371 putP CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007827 putP CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025319 putP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007485 putP CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005808 putP CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003433 putP CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001026 putP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001104 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002107 putP CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131189 putP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000603 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001082 putP CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064549 putP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002487 putP CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002251 putP CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003459 putP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005263 putP CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001965 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001277 putP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005473 putP CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003315 putP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003192 putP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008458 putP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005599 putP CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007592 putP CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008021 putP CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007807 putP CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004690 putP CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005589 putP CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008794 putP CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001738 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001726 putP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002433 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005768 putP CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007747 putP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005278 putP CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006470 putP CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107461 putP CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083510 putP CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093940 putP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008328 putP CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007976 putP CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009162 putP CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002263 putP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007714 putP CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004855 putP CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001112 putP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001113 putP CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001834 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005677 putP CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000329 putP CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000392 putP CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002624 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237962 putP CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006152 putP CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001488 putP CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004324 putP CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001567 putP CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121424 putP CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007295 putP CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006161 putP CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008126 putP CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007001 putP CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032179 putP CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006149 putP CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002731 putP CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007338 putP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006243 putP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001800 putP CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002197 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002808 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1127456 to 1138964
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000973rutRCDSforward11273931128031Upstream
AEC-0000974putACDScomplement11280711132033Upstream
AEC-0000975putPCDSforward11324561133964Matches
AEC-0000976efeU_1CDSpforward11345071134617Downstream
AEC-0004437efeUpseudogeneforward11345071135336Downstream
AEC-0000977efeU_2CDSpforward11346051135336Downstream
AEC-0000978efeOCDSforward11353941136521Downstream
AEC-0000979efeBCDSforward11365271137798Downstream
AEC-0000980phoHCDSforward11381431139207Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948