Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001007 (lpxL) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001007 showshow history
Names
lpxL ECDH10B_1125
Product
lauryl-acyl carrier protein (ACP)-dependent acyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1170330 1171250 921 307
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011920 (IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase) Jul 2009
Automated Process Approved IPR004960 (IPR004960 Bacterial lipid A biosynthesis acyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxL Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003574
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1125 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lauryl-acyl carrier protein (ACP)-dependent acyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Protein Sequence Similarity - InterPro Domain: IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004960 Bacterial lipid A biosynthesis acyltransferase Protein Sequence Similarity - InterPro Domain: IPR004960
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003574 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003574
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009244 lipopolysaccharide core region biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004960
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011920
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001586 lpxL CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000988 lpxL CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019946 lpxL CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002124 htrB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003676 htrB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007228 lpxL CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001057 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005424 lpxL CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000972 htrB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008375 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008072 lpxL CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008861 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077424 lpxL CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007891 lpxL CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008353 lpxL CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001216 lpxL CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005619 htrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005274 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010147 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009181 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010096 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005364 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006273 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006542 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010054 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006481 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007138 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010009 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009702 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010246 lpxL CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025492 lpxL CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007522 lpxL CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005853 htrB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003574 lpxL CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001065 lpxL CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001144 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002075 lpxL CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131379 lpxL CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000429 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001181 htrB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062038 htrB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001189 htrB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001661 htrB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003531 htrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006208 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001929 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001309 htrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006486 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006158 htrB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005940 htrB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008426 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005630 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008332 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008052 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008328 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004722 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005620 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008379 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001708 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001696 htrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002389 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005799 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008149 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005310 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006502 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107511 htrB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083479 htrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094022 htrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008297 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008744 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008102 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002228 htrB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007688 lpxL CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004784 lpxL CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002641 htrB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072190 htrB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087408 htrB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001148 htrB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001159 lpxL CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001628 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004887 htrB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001401 htrB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000024 htrB_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000007 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005523 htrB1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002578 htrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003079 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001958 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1165330 to 1176250
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001003mdoGCDSforward11640031165538Downstream
AEC-0004440mdoHCDSforward11655311168074Downstream
AEC-0001004yceKCDSforward11682471168474Downstream
AEC-0001005msyBCDScomplement11684751168849Downstream
AEC-0001006mdtGCDScomplement11689321170158Downstream
AEC-0001007lpxLCDScomplement11703301171250Matches
AEC-0001008yceACDSforward11714751172527Upstream
AEC-0001009yceICDScomplement11725691173144Upstream
AEC-0001010yceJCDScomplement11731481173714Upstream
AEC-0001011yceOCDScomplement11739751174115Upstream
AEC-0001012solACDScomplement11741361175254Upstream
AEC-0001013bssSCDScomplement11753691175623Upstream
AEC-0001014dinICDScomplement11759101176155Upstream
AEC-0001015pyrCCDScomplement11762291177275Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948