Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001012 (solA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001012 showshow history
Names
solA ECDH10B_1130
Product
N-methyltryptophan oxidase, FAD-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1174136 1175254 1119 373
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name solA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003590
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1130 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N-methyltryptophan oxidase, FAD-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003590 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003590
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002036 solA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002139 solA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002119 solA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003680 solA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007222 solA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001061 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005418 nagC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000976 solA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008369 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008078 solA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008867 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077430 solA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007885 solA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008359 solA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001221 solA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005625 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005280 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010152 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009186 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010101 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005359 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006278 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006547 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010059 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010563 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007143 solA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010015 solA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009707 solA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010251 solA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025497 solA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007528 solA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005858 solA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003590 solA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001070 solA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001149 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002069 solA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131384 solA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000423 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001187 solA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006202 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001922 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001315 solA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006480 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006144 solA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005926 solA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008420 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005636 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008338 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008058 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008334 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004728 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005626 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008385 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001703 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001691 solA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002383 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005805 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008144 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005316 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006508 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107518 solA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083474 solA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094037 solA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008291 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008750 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008108 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002221 solA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007680 solA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004778 solA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002413 solA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072195 solA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087413 solA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001153 solA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001165 solA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001638 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004922 solA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001411 solA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000033 solA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000012 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239699 solA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005820 solA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002351 solA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001016 solA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123450 solA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004589 solA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007804 solA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008921 solA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008371 solA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031432 solA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008318 solA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002465 solA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002235 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005531 solA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002573 solA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003069 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001966 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1169136 to 1180254
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001006mdtGCDScomplement11689321170158Downstream
AEC-0001007lpxLCDScomplement11703301171250Downstream
AEC-0001008yceACDSforward11714751172527Downstream
AEC-0001009yceICDScomplement11725691173144Downstream
AEC-0001010yceJCDScomplement11731481173714Downstream
AEC-0001011yceOCDScomplement11739751174115Downstream
AEC-0001012solACDScomplement11741361175254Matches
AEC-0001013bssSCDScomplement11753691175623Upstream
AEC-0001014dinICDScomplement11759101176155Upstream
AEC-0001015pyrCCDScomplement11762291177275Upstream
AEC-0001016yceBCDScomplement11773811177941Upstream
AEC-0004441grxBCDScomplement11780751178722Upstream
AEC-0001017mdtHCDScomplement11787861179994Upstream
AEC-0001018rimJCDSforward11802301180814Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948