Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001021 (yceN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001021 showshow history
Names
yceN ECDH10B_1140
Product
predicted inner membrane protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1182507 1184042 1536 512
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004268 (IPR004268 Peptidoglycan biosynthesis protein MurJ) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yceN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003630
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1140 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted inner membrane protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004268 Peptidoglycan biosynthesis protein MurJ Protein Sequence Similarity - InterPro Domain: IPR004268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003630 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003630
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009405 (OBSOLETE) pathogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004268
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000264 murJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000267 murJ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017057 murJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002109 mviN CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003690 mviN CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007212 mviN CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001071 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005408 mviN CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000986 mviN CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008357 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008088 mviN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008877 MviN CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077442 murJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007875 mviN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008369 mviN CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001231 yceN CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005635 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005290 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010162 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009196 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010111 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005349 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006288 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006557 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010069 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010553 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007153 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010025 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009717 mviN CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010261 mviN CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025507 yceN CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007538 murJ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005868 mviN CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003630 murJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001080 yceN CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001159 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002059 mviN CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131394 yceN CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000413 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001197 mviN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062784 yceN CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001253 mviN CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000657 mviN CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003889 yceN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006192 mviN CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001912 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001325 yceN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006470 mviN CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006113 mviN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005899 mviN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008410 mviN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005646 mviN CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008348 mviN CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008068 mviN CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008344 mviN CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004738 mviN CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005636 mviN CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008395 mviN CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001693 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001681 yceN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002372 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005816 mviN CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008134 mviN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005326 mviN CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006518 mviN CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107534 yceN CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083464 yceN CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094071 yceN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008281 mviN CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008760 mviN CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008118 mviN CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002211 mviN CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007669 mviN CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004768 mviN CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002398 mviN CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072205 yceN CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087422 yceN CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001162 mviN CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001175 yceN CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000327 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006942 mviN CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002632 murJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000254 yceN CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003582 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238823 yceN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006553 mviN CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001732 yceN CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004533 mviN CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001398 mviN CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122047 yceN CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005470 mviN CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006597 mviN CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003975 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008181 mviN CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005827 mviN CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031983 yceN CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005938 mviN CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001841 yceN CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001280 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007709 mviN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006017 mviN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002108 yceN CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002478 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002552 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1177507 to 1189042
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001016yceBCDScomplement11773811177941Upstream
AEC-0004441grxBCDScomplement11780751178722Upstream
AEC-0001017mdtHCDScomplement11787861179994Upstream
AEC-0001018rimJCDSforward11802301180814Upstream
AEC-0001019yceHCDSforward11808251181472Upstream
AEC-0001020mviMCDSforward11814741182397Upstream
AEC-0001021yceNCDSforward11825071184042Matches
AEC-0001022flgNCDScomplement11840821184498Downstream
AEC-0001023flgMCDScomplement11845031184796Downstream
AEC-0001024flgACDScomplement11848721185531Downstream
AEC-0001025flgBCDSforward11856861186102Downstream
AEC-0001026flgCCDSforward11861061186510Downstream
AEC-0001027flgDCDSforward11865221187217Downstream
AEC-0001028flgECDSforward11872421188450Downstream
AEC-0001029flgFCDSforward11884701189225Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948