Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001044 (fabD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001044 showshow history
Names
fabD ECDH10B_1164
Product
malonyl-CoA-[acyl-carrier-protein] transacylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1204396 1205325 930 310
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016035 (IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase) Jul 2009
Automated Process Approved IPR016036 (IPR016036 Malonyl-CoA ACP transacylase, ACP-binding) Jul 2009
Automated Process Approved IPR001227 (IPR001227 Acyl transferase domain superfamily) Jul 2009
Automated Process Approved IPR004410 (IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type) Jul 2009
Automated Process Approved IPR014043 (IPR014043 Acyl transferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016035
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004410
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004410
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001227
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fabD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003698
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1164 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product malonyl-CoA-[acyl-carrier-protein] transacylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Protein Sequence Similarity - InterPro Domain: IPR016035
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Protein Sequence Similarity - InterPro Domain: IPR016036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type Protein Sequence Similarity - InterPro Domain: IPR004410
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014043 Acyl transferase Protein Sequence Similarity - InterPro Domain: IPR014043
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001227 Acyl transferase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR001227
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003698 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003698
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016035
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004410
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001227
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004410
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016036
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001765 fabD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001207 fabD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020856 fabD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002087 fabD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003718 fabD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001094 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005382 fabD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001008 fabD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008330 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077465 fabD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001258 fabD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005656 fabD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002215 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010187 fabD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009218 fabD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010135 fabD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006311 fabD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010850 fabD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025531 fabD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005892 fabD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003698 fabD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001104 fabD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001183 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002034 fabD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131417 fabD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000389 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001220 fabD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062056 fabD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001043 fabD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000455 fabD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006166 fabD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001887 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001350 fabD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006444 fabD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0006047 fabD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005836 fabD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008625 fabD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005672 fabD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008845 fabD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008095 fabD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008720 fabD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004764 fabD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005662 fabD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008420 fabD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001669 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001657 fabD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002341 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005842 fabD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008683 fabD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005352 fabD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006545 fabD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107579 fabD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083440 fabD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094132 fabD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008255 fabD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006294 fabD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002187 fabD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007643 fabD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002371 fabD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072229 fabD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087440 fabD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001183 fabD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001198 fabD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001652 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004943 fabD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001423 fabD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000045 fabD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000024 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239678 fabD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007621 fabD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002332 fabD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001878 fabD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120618 fabD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004729 fabD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005757 fabD CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007867 fabD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008466 fabD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031449 fabD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007696 fabD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002450 fabD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002220 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007939 fabD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005544 fabD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002559 fabD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003056 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001979 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1199396 to 1210325
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001037yceQCDSforward11991701199490Upstream
AEC-0001038rluCCDSforward11996081200567Upstream
AEC-0001039yceFCDScomplement12006791201263Upstream
AEC-0004246sraBncRNAforward12012571201425Upstream
AEC-0001040yceDCDSforward12014621201983Upstream
AEC-0001041rpmFCDSforward12020351202208Upstream
AEC-0001042plsXCDSforward12022891203359Upstream
AEC-0001043fabHCDSforward12034271204380Upstream
AEC-0001044fabDCDSforward12043961205325Matches
AEC-0001045fabGCDSforward12053381206072Downstream
AEC-0001046acpPCDSforward12062831206519Downstream
AEC-0001047fabFCDSforward12066071207848Downstream
AEC-0001048pabCCDSforward12079681208777Downstream
AEC-0001049yceGCDSforward12087801209802Downstream
AEC-0001050tmkCDSforward12097921210433Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948