Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001061 (ndh) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001061 showshow history
Names
ndh ECDH10B_1181
Product
respiratory NADH dehydrogenase 2/cupric reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1220753 1222057 1305 435
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ndh Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003746
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1181 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product respiratory NADH dehydrogenase 2/cupric reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003746 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003746
Reference: Escherichia coli K-12 MG1655
Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000651 ndh CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000444 ndh CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018001 ndh CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002072 ndh CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003736 ndh CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009062 ndh CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001111 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005364 ndh CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001025 ndh CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008308 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009616 ndh CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009006 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077485 ndh CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009586 ndh CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010262 ndh CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001275 ndh CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005674 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006403 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009236 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009998 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009446 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006329 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009364 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010115 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009706 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010744 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010467 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010230 ndh CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010349 ndh CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025548 ndh CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008194 ndh CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005910 ndh CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003746 ndh CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001121 ndh CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001201 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002016 ndh CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131434 ndh CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000370 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001240 ndh CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062074 ndh CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001160 ndh CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002801 ndh CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002376 ndh CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006148 ndh CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001861 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001370 ndh CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006427 ndh CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005988 ndh CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005779 ndh CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008608 ndh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005689 ndh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007916 ndh CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008118 ndh CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007442 ndh CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004781 ndh CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005679 ndh CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008437 ndh CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001652 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001640 ndh CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002321 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005859 ndh CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008666 ndh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005375 ndh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008281 ndh CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107622 ndh CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083423 ndh CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094185 ndh CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008237 ndh CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008476 ndh CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006276 ndh CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002167 ndh CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007625 ndh CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006343 ndh CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002354 ndh CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072247 ndh CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087456 ndh CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001200 ndh CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001215 ndh CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001673 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005084 ndh CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003331 ndh CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000062 ndh CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000048 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239643 ndh CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006935 ndh CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002306 ndh CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005053 ndh CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001897 ndh CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120679 ndh CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004749 ndh CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005738 ndh CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000627 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009621 ndh CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008446 ndh CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031471 ndh CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007677 ndh CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002427 ndh CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002197 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007958 ndh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005561 ndh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002534 ndh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003022 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002000 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1215753 to 1227057
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001054fhuECDScomplement12140301216219Upstream
AEC-0001055hinTCDSforward12165531216912Upstream
AEC-0001056ycfLCDSforward12169151217292Upstream
AEC-0001057ycfMCDSforward12173061217947Upstream
AEC-0001058thiKCDSforward12179281218752Upstream
AEC-0001059nagZCDSforward12187631219788Upstream
AEC-0001060ycfPCDSforward12198111220353Upstream
AEC-0001061ndhCDSforward12207531222057Matches
AEC-0001062ycfJCDSforward12222671222806Downstream
AEC-0001063ycfQCDScomplement12228681223500Downstream
AEC-0001064ycfRCDSforward12237411223998Downstream
AEC-0004442ycfSCDScomplement12240801225042Downstream
AEC-0001065mfdCDScomplement12251861228632Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948