Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001077 (potA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001077 showshow history
Names
potA ECDH10B_1198
Product
polyamine transporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1239126 1240262 1137 379
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR005893 (IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit) Jul 2009
Automated Process Approved IPR013611 (IPR013611 Transport-associated OB, type 2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015846 polyamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015417 ABC-type polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name potA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003796
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1198 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product polyamine transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit Protein Sequence Similarity - InterPro Domain: IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013611 Transport-associated OB, type 2 Protein Sequence Similarity - InterPro Domain: IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003796 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003796
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015846 polyamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015417 ABC-type polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002499 potA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002396 potA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003754 potA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006003 potA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001130 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009732 potA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001042 potA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008288 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009271 potA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008714 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077585 potA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010215 potA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010242 potA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001349 potA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005731 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006483 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010283 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009317 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008973 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007818 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006407 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008680 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010195 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008409 potA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008101 potA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008200 potA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007879 potA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025626 potA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008213 potA_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005924 potA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003796 potA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001138 potA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001219 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001999 potA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131520 potA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002490 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001257 potA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062713 potA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001444 potA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001825 potA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004310 potA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006132 potA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001841 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001386 potA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006409 potA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005929 potA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005724 potA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008590 potA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005707 potA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007934 potA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008136 potA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007459 potA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004798 potA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005696 potA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008455 potA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001636 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001624 potA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002301 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005875 potA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008825 potA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005393 potA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008299 potA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107654 potA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083408 potA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094223 potA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008220 potA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008494 potA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006259 potA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002124 potA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006707 potA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006328 potA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002339 potA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072263 potA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087471 potA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001215 potA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001230 potA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1234126 to 1245262
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001070nagKCDSforward12332611234172Downstream
AEC-0001071cobBCDSforward12341881235027Downstream
AEC-0001072ycfZCDScomplement12351471235935Downstream
AEC-0001073ymfACDScomplement12359321236393Downstream
AEC-0001074potDCDScomplement12364511237497Downstream
AEC-0001075potCCDScomplement12374941238288Downstream
AEC-0001076potBCDScomplement12382851239112Downstream
AEC-0001077potACDScomplement12391261240262Matches
AEC-0001078pepTCDSforward12405121241738Upstream
AEC-0001079ycfDCDScomplement12417871242908Upstream
AEC-0001080phoQCDScomplement12429841244444Upstream
AEC-0004443phoPCDScomplement12444441245115Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948