Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001081 (purB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001081 showshow history
Names
purB ECDH10B_1203
Product
adenylosuccinate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1245284 1246654 1371 457
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008948 (IPR008948 L-Aspartase-like) Jul 2009
Automated Process Approved IPR000362 (IPR000362 Fumarate lyase family) Jul 2009
Automated Process Approved IPR004769 (IPR004769 Adenylosuccinate lyase) Jul 2009
Automated Process Approved IPR013539 (IPR013539 Adenylosuccinate lyase PurB, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008948
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003810
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1203 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product adenylosuccinate lyase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004769 Adenylosuccinate lyase Protein Sequence Similarity - InterPro Domain: IPR004769
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013539 Adenylosuccinate lyase PurB, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013539
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000362 Fumarate lyase family Protein Sequence Similarity - InterPro Domain: IPR000362
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008948 L-Aspartase-like Protein Sequence Similarity - InterPro Domain: IPR008948
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003810 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003810
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008948
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000188 purB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000146 purB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017763 purB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002033 purB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003759 purB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006010 purB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001136 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009738 purB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001047 purB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008282 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009277 purB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008708 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077618 purB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010540 purB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010235 purB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001354 purB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005736 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003974 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010308 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009342 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008998 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007842 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006432 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008654 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010220 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008414 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010411 purB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008131 purB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008175 purB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007906 purB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025655 purB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008218 purB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005929 purB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003810 purB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001143 purB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001224 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001993 purB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131552 purB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002461 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001263 purB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062708 purB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001441 purB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000641 purB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004305 purB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006126 purB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001836 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001392 purB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006403 purB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005905 purB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005701 purB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008584 purB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005713 purB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007940 purB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008142 purB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007465 purB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004804 purB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005702 purB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008461 purB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001630 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001618 purB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002294 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005881 purB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008819 purB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005399 purB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008305 purB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107670 purB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083402 purB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094239 purB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008214 purB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008500 purB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006252 purB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002116 purB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006712 purB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006323 purB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002334 purB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072285 purB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087492 purB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001238 purB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001235 purB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000418 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005128 purB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003318 purB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000075 purB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000060 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238546 purB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006968 purB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002286 purB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005036 purB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001763 purB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120739 purB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004767 purB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005721 purB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002614 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007842 purB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007620 purB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031492 purB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007658 purB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002407 purB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002176 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007973 purB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005577 purB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002519 purB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003004 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002017 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1240284 to 1251654
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001078pepTCDSforward12405121241738Downstream
AEC-0001079ycfDCDScomplement12417871242908Downstream
AEC-0001080phoQCDScomplement12429841244444Downstream
AEC-0004443phoPCDScomplement12444441245115Downstream
AEC-0001081purBCDScomplement12452841246654Matches
AEC-0001082hflDCDScomplement12466581247299Upstream
AEC-0001083mnmACDScomplement12473351248441Upstream
AEC-0001084nudJCDScomplement12484951248956Upstream
AEC-0001085rluECDScomplement12489661249619Upstream
AEC-0004421icdCDSforward12497911251041Upstream
AEC-0004444misc_featureforward12508871250888Upstream
AEC-0001086elbACDScomplement12511441251467Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948