Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001116 (dadX) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001116 showshow history
Names
dadX ECDH10B_1243
Product
alanine racemase 2, PLP-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1278343 1279413 1071 357
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Jul 2009
Automated Process Approved IPR000821 (IPR000821 Alanine racemase) Jul 2009
Automated Process Approved IPR001608 (IPR001608 Alanine racemase, N-terminal) Jul 2009
Automated Process Approved IPR011079 (IPR011079 Alanine racemase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dadX Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003997
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1243 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alanine racemase 2, PLP-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000821 Alanine racemase Protein Sequence Similarity - InterPro Domain: IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001608 Alanine racemase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001608
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011079 Alanine racemase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011079
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003997 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003997
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006522 alanine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008784 alanine racemase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000821
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002376 dadX CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002283 dadX CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001604 dadB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003798 alr1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006051 alr1 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001243 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009782 dadX CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001135 dadX CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008241 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005085 alr1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008950 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077750 dadX CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009885 alr1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010569 alr1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001392 dadX CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005777 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010389 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009424 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009081 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008845 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006517 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010368 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010307 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008500 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010495 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009933 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009783 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007991 alr1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025740 dadX CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005840 dadX CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005970 alr1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003997 dadX CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001206 dadX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001265 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001958 alr1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131636 pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002430 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001380 dadX CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005507 alr CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001184 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002105 dadX CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005788 alr CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004026 dadX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004650 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006362 alr CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005302 alr CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005356 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008126 alr CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005440 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006305 alr CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004478 alr CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001073 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001071 dadX CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001427 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006554 alr CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009132 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006028 alr CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007103 alr CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108883 dadX CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082789 dadX CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095861 dadX CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007525 alr CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006869 alr CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007416 alr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007825 alr1 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072320 dadX CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087519 dadX CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001272 dadX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001273 dadX CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003125 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006695 dadB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002681 dadX CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002484 dadX CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001690 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1273343 to 1284413
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001112nhaBCDScomplement12726401274181Upstream
AEC-0001113fadRCDSforward12744021275121Upstream
AEC-0001114ycgBCDScomplement12751731276705Upstream
AEC-0001115dadACDSforward12770351278333Upstream
AEC-0001116dadXCDSforward12783431279413Matches
AEC-0000065IS1414.1repeat_regionforward12796521279753Downstream
AEC-0001117cvrACDScomplement12797991281535Downstream
AEC-0001118ldcACDScomplement12816301282544Downstream
AEC-0001119emtACDSforward12826441283255Downstream
AEC-0001120ycgRCDScomplement12832571283991Downstream
AEC-0001121ymgECDSforward12841921284446Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948