Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001118 (ldcA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001118 showshow history
Names
ldcA ECDH10B_1245
Product
L,D-carboxypeptidase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1281630 1282544 915 305
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003507 (IPR003507 Peptidase family S66) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ldcA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004002
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1245 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L,D-carboxypeptidase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003507 Peptidase family S66 Protein Sequence Similarity - InterPro Domain: IPR003507
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004002 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004002
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002416 ldcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002495 ldcA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002001 ldcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003800 ldcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006054 ldcA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001245 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009785 ldcA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001137 ldcA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008238 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005088 ldcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008947 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077752 ldcA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009882 ldcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010564 ldcA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001394 ldcA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005779 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004058 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010391 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009426 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009083 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008848 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006519 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010366 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008503 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010498 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009936 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009788 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007995 ldcA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025743 ldcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005842 ldcA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005972 ldcA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004002 ldcA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001208 ldcA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001267 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001955 ldcA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131638 ldcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002432 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001382 ldcA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005509 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001186 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002103 ycgQ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005790 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004036 ycgQ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0003997 ycgQ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004652 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006360 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005300 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005354 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008124 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005438 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006303 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004480 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001075 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001073 ycgQ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001429 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006552 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008632 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006026 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007101 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108878 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082791 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095856 ldcA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007527 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006867 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007414 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002086 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006753 ldcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007827 ldcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001403 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072323 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087522 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001275 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001275 ldcA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1276630 to 1287544
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001114ycgBCDScomplement12751731276705Downstream
AEC-0001115dadACDSforward12770351278333Downstream
AEC-0001116dadXCDSforward12783431279413Downstream
AEC-0000065IS1414.1repeat_regionforward12796521279753Downstream
AEC-0001117cvrACDScomplement12797991281535Downstream
AEC-0001118ldcACDScomplement12816301282544Matches
AEC-0001119emtACDSforward12826441283255Upstream
AEC-0001120ycgRCDScomplement12832571283991Upstream
AEC-0001121ymgECDSforward12841921284446Upstream
AEC-0001122ycgYCDSforward12846241285064Upstream
AEC-0001123treACDScomplement12851431286840Upstream
AEC-0001124dhaMCDScomplement12871601288578Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948