Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001124 (dhaM) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001124 showshow history
Names
dhaM ycgC dhaH ECDH10B_1251
Product
fused predicted dihydroxyacetone-specific PTS enzymes: HPr component; EI component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1287160 1288578 1419 473
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008731 (IPR008731 Phosphotransferase system, enzyme I N-terminal) Jul 2009
Automated Process Approved IPR008279 (IPR008279 PEP-utilising enzyme, mobile domain) Jul 2009
Automated Process Approved IPR000032 (IPR000032 Phosphocarrier protein HPr-like) Jul 2009
Automated Process Approved IPR004701 (IPR004701 Phosphotransferase system, mannose-type IIA component) Jul 2009
Automated Process Approved IPR001020 (IPR001020 Phosphotransferase system, HPr histidine phosphorylation site) Jul 2009
Automated Process Approved IPR012844 (IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain) Jul 2009
Automated Process Approved IPR005698 (IPR005698 (DEPRECATED) Phosphotransferase system, phosphocarrier HPr protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001020
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008965 phosphoenolpyruvate-protein phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dhaM Experimental - PubMed ID: 11350937
Reference: Escherichia coli 		Jan 2008
Person Approved synonym dhaH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004024
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved synonym ycgC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2008
Person Approved locus tag ECDH10B_1251 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fused predicted dihydroxyacetone-specific PTS enzymes: HPr component; EI component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008279 PEP-utilising enzyme, mobile domain Protein Sequence Similarity - InterPro Domain: IPR008279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000032 Phosphocarrier protein HPr-like Protein Sequence Similarity - InterPro Domain: IPR000032
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008731 Phosphotransferase system, enzyme I N-terminal Protein Sequence Similarity - InterPro Domain: IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004701 Phosphotransferase system, mannose-type IIA component Protein Sequence Similarity - InterPro Domain: IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005698 (DEPRECATED) Phosphotransferase system, phosphocarrier HPr protein Protein Sequence Similarity - InterPro Domain: IPR005698
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR012844
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Protein Sequence Similarity - InterPro Domain: IPR001020
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved EC number 2.7.1.- Published Annotation - Swiss-Prot Accession Number: P37349 Jan 2008
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004024 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004024
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0016310 phosphorylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001020
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005351 carbohydrate:proton symporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016772 transferase activity, transferring phosphorus-containing groups GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008965 phosphoenolpyruvate-protein phosphotransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008731
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003752 dhaM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003519 dhaM CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006060 dhaM CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001256 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009792 dhaM CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001148 ycgC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008231 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005095 dhaM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008941 DhaM CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077767 dhaM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009875 dhaM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010557 dhaM CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001405 dhaM CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005786 dhaM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009951 dhaM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009803 dhaM CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025759 dhaM CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005854 dhaM CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005979 dhaM CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004024 dhaM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001214 dhaH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001274 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001942 dhaM CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131655 dhaM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004372 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001395 ycgC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002077 ycgC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006760 dhaM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007834 dhaM CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072338 ycgC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087539 ycgC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001287 ycgC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000021 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001644 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003265 dhaM CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002186 dhaM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003058 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1282160 to 1293578
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001118ldcACDScomplement12816301282544Downstream
AEC-0001119emtACDSforward12826441283255Downstream
AEC-0001120ycgRCDScomplement12832571283991Downstream
AEC-0001121ymgECDSforward12841921284446Downstream
AEC-0001122ycgYCDSforward12846241285064Downstream
AEC-0001123treACDScomplement12851431286840Downstream
AEC-0001124dhaMCDScomplement12871601288578Matches
AEC-0001125dhaLCDScomplement12885891289221Upstream
AEC-0001126dhaKCDScomplement12892321290302Upstream
AEC-0001127dhaRCDSforward12905301292449Upstream
AEC-0001128ycgVCDScomplement12925491295416Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948