Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001136 (hemA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001136 showshow history
Names
hemA ECDH10B_1263
Product
glutamyl tRNA reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1303178 1304434 1257 419
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015895 (IPR015895 Glutamyl-tRNA reductase, N-terminal) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR015896 (IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain) Jul 2009
Automated Process Approved IPR000343 (IPR000343 Glutamyl-tRNA reductase) Jul 2009
Automated Process Approved IPR006151 (IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase) Jul 2009
Automated Process Approved IPR003462 (IPR003462 Ornithine cyclodeaminase/mu-crystallin) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008883 glutamyl-tRNA reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name hemA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004064
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1263 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamyl tRNA reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015895 Glutamyl-tRNA reductase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain Protein Sequence Similarity - InterPro Domain: IPR015896
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000343 Glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR000343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003462 Ornithine cyclodeaminase/mu-crystallin Protein Sequence Similarity - InterPro Domain: IPR003462
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004064 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004064
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0033014 tetrapyrrole biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008883 glutamyl-tRNA reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015895
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001222 hemA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000782 hemA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014552 hemA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001944 hemA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003822 hemA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006073 hemA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001268 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009804 hemA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001159 hemA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008217 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005109 hemA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077779 hemA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008536 hemA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001416 hemA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005800 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001407 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010404 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009438 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009095 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008861 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006531 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009467 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010324 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010510 hemA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008009 hemA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025771 hemA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005866 hemA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005992 hemA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004064 hemA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001226 hemA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001287 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001931 hemA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131667 hemA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004360 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001408 hemA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062452 hemA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001398 hemA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000558 hemA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003364 hemA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005538 hemA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001223 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002076 hemA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005818 hemA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004123 hemA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004080 hemA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004679 hemA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006334 hemA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005274 hemA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005328 hemA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008095 hemA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005409 hemA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006273 hemA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004510 hemA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001098 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001096 hemA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001462 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006523 hemA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008658 hemA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005998 hemA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007074 hemA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108828 hemA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082813 hemA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095784 hemA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007555 hemA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006839 hemA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007388 hemA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002059 hemA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006777 hemA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001434 hemA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072350 hemA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087551 hemA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001299 hemA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002161 hemA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000343 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006995 hemA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002614 hemA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000271 hemA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000139 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238754 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006574 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001700 hemA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004508 hemA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001420 hemA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121949 hemA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005443 hemA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006628 hemA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002852 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008211 hemA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005854 hemA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032008 hemA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005967 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001812 hemA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001310 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007738 hemA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006040 hemA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002084 hemA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002450 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002579 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1298178 to 1309434
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001131ychHCDSforward12982551298533Upstream
AEC-0001132ychMCDScomplement12985881300267Upstream
AEC-0001133prsACDScomplement13003921301339Upstream
AEC-0001134ispECDScomplement13014901302341Upstream
AEC-0001135lolBCDScomplement13023411302964Upstream
AEC-0001136hemACDSforward13031781304434Matches
AEC-0001137prfACDSforward13044761305558Downstream
AEC-0001138prmCCDSforward13055581306391Downstream
AEC-0001139ychQCDSforward13063881306780Downstream
AEC-0001140ychACDSforward13067841307593Downstream
AEC-0001141kdsACDSforward13076291308483Downstream
AEC-0004013ldrACDScomplement13086321308739Downstream
AEC-0004247rdlAncRNAforward13087871308850Downstream
AEC-0004014ldrBCDScomplement13091671309274Downstream
AEC-0004248rdlBncRNAforward13093221309385Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948