Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001142 (chaA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001142 showshow history
Names
chaA ECDH10B_1275
Product
calcium/sodium:proton antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1310213 1311313 1101 367
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004713 (IPR004713 Calcium/proton exchanger) Jul 2009
Automated Process Approved IPR004837 (IPR004837 Sodium/calcium exchanger membrane region) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name chaA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004082
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1275 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product calcium/sodium:proton antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004713 Calcium/proton exchanger Protein Sequence Similarity - InterPro Domain: IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004837 Sodium/calcium exchanger membrane region Protein Sequence Similarity - InterPro Domain: IPR004837
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004082 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004082
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001949 chaA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001915 chaA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014743 chaA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001937 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003835 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006082 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001275 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009812 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001165 chaA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008208 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005117 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006868 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077787 chaA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008527 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008587 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001424 chaA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005808 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001415 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010412 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009446 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009103 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008869 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006539 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009460 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010332 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010032 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010518 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009922 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009221 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008017 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025779 chaA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005873 chaA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006001 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004082 chaA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001238 chaA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001296 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001923 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131673 chaA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004352 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001415 chaA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062282 chaA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001003 chaA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003616 chaA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005544 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001229 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002070 chaA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005824 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004145 chaA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004099 chaA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004685 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006328 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005268 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005322 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008089 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005403 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006267 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004516 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001104 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001102 chaA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001468 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006516 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008932 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005992 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007068 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107688 chaA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083394 chaA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095765 chaA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007561 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006833 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007382 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002052 chaA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006786 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007038 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001441 chaA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072356 chaA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087557 chaA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001308 chaA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002154 chaA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000381 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007110 chaA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002882 chaA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000303 chaA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000100 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238381 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006636 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001627 chaA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004442 chaA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001471 chaA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121810 chaA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005377 chaA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000932 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009140 chaA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032071 chaA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006032 chaA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001387 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007224 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006097 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002036 chaA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002378 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002646 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1305213 to 1316313
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001137prfACDSforward13044761305558Downstream
AEC-0001138prmCCDSforward13055581306391Downstream
AEC-0001139ychQCDSforward13063881306780Downstream
AEC-0001140ychACDSforward13067841307593Downstream
AEC-0001141kdsACDSforward13076291308483Downstream
AEC-0004013ldrACDScomplement13086321308739Downstream
AEC-0004247rdlAncRNAforward13087871308850Downstream
AEC-0004014ldrBCDScomplement13091671309274Downstream
AEC-0004248rdlBncRNAforward13093221309385Downstream
AEC-0004015ldrCCDScomplement13097021309809Downstream
AEC-0004249rdlCncRNAforward13098571309920Downstream
AEC-0001142chaACDScomplement13102131311313Matches
AEC-0001143chaBCDSforward13115831311813Upstream
AEC-0001144chaCCDSforward13119711312666Upstream
AEC-0001145ychNCDScomplement13127101313063Upstream
AEC-0001146ychOCDSforward13132481314642Upstream
AEC-0001147narLCDScomplement13146431315293Upstream
AEC-0001148narXCDScomplement13152861317082Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948