Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001172 (tonB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001172 showshow history
Names
tonB ECDH10B_1367
Product
membrane spanning protein in TonB-ExbB-ExbD complex
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1398509 1399228 720 240
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006260 (IPR006260 TonB/TolA, C-terminal) Jul 2009
Automated Process Approved IPR003538 (IPR003538 Gram-negative bacterial TonB protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006826 iron ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tonB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004196
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1367 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product membrane spanning protein in TonB-ExbB-ExbD complex Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR006260 TonB/TolA, C-terminal Protein Sequence Similarity - InterPro Domain: IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR003538 Gram-negative bacterial TonB protein Protein Sequence Similarity - InterPro Domain: IPR003538
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004196 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004196
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015031 protein transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0006826 iron ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005381 iron ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003538
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006260
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002461 tonB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001994 tonB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015515 tonB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001653 tonB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003882 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006120 tonB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001312 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009850 tonB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001199 tonB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008166 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005166 tonB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006829 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077831 tonB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008489 tonB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008683 tonB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001466 tonB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005852 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001449 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010451 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009485 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010688 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006579 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010068 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011084 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010596 tonB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009258 tonB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025812 tonB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005913 tonB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006037 tonB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004196 tonB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001278 tonB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001330 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001879 tonB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131706 tonB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004319 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001455 tonB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062579 tonB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001334 tonB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003885 tonB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000594 tonB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005585 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001268 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002021 tonB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005863 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004260 tonB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004209 tonB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004725 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006289 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005230 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005287 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004745 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005363 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006229 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004553 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001141 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001140 tonB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001517 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006476 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008741 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005954 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007033 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107761 tonB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083363 tonB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095649 tonB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007603 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005942 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008690 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002013 tonB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006825 tonB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008421 tonB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001502 tonB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072398 tonB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087594 tonB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001344 tonB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002101 tonB CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006529 tonB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003505 tonB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002374 tonB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002990 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239050 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006260 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001875 tonB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004692 tonB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001258 tonB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122493 tonB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005624 tonB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007727 tonB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003871 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007518 tonB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006031 tonB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031743 tonB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005781 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002000 tonB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001123 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007171 tonB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005917 tonB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002201 tonB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002598 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002430 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1393509 to 1404228
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004563phi80lacZdelM15prophageforward13496131396987Upstream
AEC-0004499Tn1000repeat_regionforward13910071396987Upstream
AEC-0004501tnpRCDScomplement13932311393782Upstream
AEC-0004498tnpACDSforward13939461396954Upstream
AEC-0004452kchpseudogenecomplement13969861397689Upstream
AEC-0004453yciICDScomplement13979891398285Upstream
AEC-0001172tonBCDSforward13985091399228Matches
AEC-0001173yciACDScomplement13992681399666Downstream
AEC-0001174yciBCDScomplement13997711400310Downstream
AEC-0001175yciCCDScomplement14003401401083Downstream
AEC-0001176ompWCDSforward14014401402078Downstream
AEC-0001177yciECDScomplement14021381402644Downstream
AEC-0001178yciFCDScomplement14026901403190Downstream
AEC-0001179yciGCDScomplement14032761403455Downstream
AEC-0001180trpACDScomplement14038361404642Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948