Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001195 (ribA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001195 showshow history
Names
ribA ECDH10B_1394
Product
GTP cyclohydrolase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1425990 1426580 591 197
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000926 (IPR000926 GTP cyclohydrolase II, RibA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003935 GTP cyclohydrolase II activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ribA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004285
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1394 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product GTP cyclohydrolase II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000926 GTP cyclohydrolase II, RibA Protein Sequence Similarity - InterPro Domain: IPR000926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004285 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004285
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009231 riboflavin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003935 GTP cyclohydrolase II activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000926
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000391 ribA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000312 ribA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020612 ribA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001677 ribA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003908 ribA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006147 ribA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001342 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009877 ribA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001271 ribA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008137 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005193 ribA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006803 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077862 ribA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008462 ribA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006089 ribA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001566 ribA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005919 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002256 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005290 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009655 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010546 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010941 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006751 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007727 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011226 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007896 ribA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008720 ribA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026262 ribA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005942 ribA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006064 ribA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004285 ribA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001306 ribA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001356 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001851 ribA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131814 ribA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002293 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001554 ribA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062204 ribA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001097 ribA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001701 ribA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002770 ribA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005614 ribA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001303 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001993 ribA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005891 ribA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004343 ribA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004289 ribA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004754 ribA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006260 ribA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005200 ribA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004716 ribA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005334 ribA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006200 ribA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004582 ribA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001167 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001165 ribA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001551 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006447 ribA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005166 ribA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005924 ribA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007003 ribA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107817 ribA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083338 ribA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095569 ribA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007632 ribA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005912 ribA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007886 ribA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001985 ribA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006911 ribA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001546 ribA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072422 ribA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087619 ribA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001368 ribA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002044 ribA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003220 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005763 ribA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003669 ribA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002723 ribA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002369 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239093 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006344 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001909 ribA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004720 ribA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001230 ribA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122599 ribA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007136 ribA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007698 ribA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001124 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007490 ribA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006003 ribA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031771 ribA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005753 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002034 ribA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001090 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007139 ribA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005890 ribA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002228 ribA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002628 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002401 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1420990 to 1431580
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004454topACDSforward14184681421065Downstream
AEC-0001194cysBCDSforward14212751422249Downstream
AEC-0004064ymiACDSforward14225801422708Downstream
AEC-0004065yciXCDSforward14227111422878Downstream
AEC-0004455acnACDSforward14232511425926Downstream
AEC-0001195ribACDScomplement14259901426580Matches
AEC-0001196pgpBCDSforward14267501427514Upstream
AEC-0001197yciSCDSforward14276631427971Upstream
AEC-0001198yciMCDSforward14279781429147Upstream
AEC-0001199pyrFCDSforward14293411430078Upstream
AEC-0001200yciHCDSforward14300781430404Upstream
AEC-0001201osmBCDScomplement14305301430748Upstream
AEC-0001202yciTCDScomplement14310171431766Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948