Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001196 (pgpB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001196 showshow history
Names
pgpB ECDH10B_1395
Product
phosphatidylglycerophosphatase B
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1426750 1427514 765 255
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000326 (IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase) Jul 2009
Automated Process Approved IPR016118 (IPR016118 (DEPRECATED) Phosphatidic acid phosphatase/chloroperoxidase, N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgpB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004294
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_1395 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product phosphatidylglycerophosphatase B Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Protein Sequence Similarity - InterPro Domain: IPR000326
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR016118 (DEPRECATED) Phosphatidic acid phosphatase/chloroperoxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR016118
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004294 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004294
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001579 pgpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001504 pgpB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020606 pgpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001678 pgpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003909 pgpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006148 pgpB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001343 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009878 pgpB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001272 pgpB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008135 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005194 pgpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006802 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077863 pgpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008461 pgpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006090 pgpB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001567 pgpB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005920 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002255 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005291 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009656 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010547 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006752 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007728 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011227 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007897 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008782 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008304 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008719 pgpB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026261 pgpB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005943 pgpB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006065 pgpB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004294 pgpB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001307 pgpB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001357 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001850 pgpB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131815 pgpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002292 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001555 pgpB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062205 pgpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001009 pgpB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000505 pgpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002772 pgpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005615 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001304 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001992 pgpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005892 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004346 pgpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004292 pgpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004755 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006259 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005199 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005256 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004715 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005333 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006199 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004583 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001168 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001166 pgpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001552 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006446 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005167 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005923 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007002 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107819 pgpB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083337 pgpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095565 pgpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007633 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005911 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007885 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001984 pgpB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006912 pgpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001547 pgpB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072423 pgpB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087620 pgpB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001369 pgpB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002043 pgpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003221 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005766 pgpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003668 pgpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002724 pgpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002370 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239095 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006345 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001911 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004721 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001229 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122602 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007134 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007697 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001125 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007489 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006002 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031772 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005752 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002036 pgpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001089 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007138 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005888 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002229 pgpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002629 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002400 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1421750 to 1432514
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001194cysBCDSforward14212751422249Upstream
AEC-0004064ymiACDSforward14225801422708Upstream
AEC-0004065yciXCDSforward14227111422878Upstream
AEC-0004455acnACDSforward14232511425926Upstream
AEC-0001195ribACDScomplement14259901426580Upstream
AEC-0001196pgpBCDSforward14267501427514Matches
AEC-0001197yciSCDSforward14276631427971Downstream
AEC-0001198yciMCDSforward14279781429147Downstream
AEC-0001199pyrFCDSforward14293411430078Downstream
AEC-0001200yciHCDSforward14300781430404Downstream
AEC-0001201osmBCDScomplement14305301430748Downstream
AEC-0001202yciTCDScomplement14310171431766Downstream
AEC-0001203gmrCDScomplement14321771434162Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948