Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001199 (pyrF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001199 showshow history
Names
pyrF ECDH10B_1398
Product
orotidine-5'-phosphate decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1429341 1430078 738 246
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR014732 (IPR014732 Orotidine 5'-phosphate decarboxylase) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR011060 (IPR011060 Ribulose-phosphate binding barrel) Jul 2009
Automated Process Approved IPR001754 (IPR001754 Orotidine 5'-phosphate decarboxylase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pyrF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004304
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1398 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product orotidine-5'-phosphate decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014732 Orotidine 5'-phosphate decarboxylase Protein Sequence Similarity - InterPro Domain: IPR014732
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011060 Ribulose-phosphate binding barrel Protein Sequence Similarity - InterPro Domain: IPR011060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001754 Orotidine 5'-phosphate decarboxylase domain Protein Sequence Similarity - InterPro Domain: IPR001754
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004304 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004304
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000472 pyrF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000505 pyrF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020609 pyrF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001681 pyrF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003913 pyrF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006152 pyrF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001346 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009882 pyrF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001275 pyrF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008131 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005198 pyrF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005253 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077866 pyrF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008457 pyrF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006094 pyrF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001570 pyrF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005924 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002251 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005295 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009660 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010551 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007219 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006756 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007732 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011231 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007901 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008786 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008300 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007309 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008715 pyrF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026258 pyrF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006069 pyrF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004304 pyrF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001310 pyrF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001361 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001846 pyrF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131818 pyrF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002288 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001558 pyrF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062217 pyrF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001072 pyrF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001704 pyrF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002784 pyrF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005618 pyrF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001308 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001989 pyrF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005896 pyrF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004356 pyrF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004302 pyrF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004758 pyrF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006255 pyrF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005196 pyrF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005253 pyrF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004712 pyrF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005330 pyrF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006196 pyrF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004586 pyrF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001171 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001169 pyrF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001555 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006443 pyrF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005170 pyrF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005920 pyrF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107825 pyrF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083334 pyrF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095555 pyrF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007636 pyrF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005907 pyrF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001981 pyrF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006916 pyrF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006542 pyrF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001550 pyrF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072427 pyrF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087623 pyrF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001372 pyrF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002040 pyrF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003226 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005785 pyrF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003663 pyrF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002729 pyrF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003361 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239106 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006349 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001916 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004725 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001225 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122618 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007130 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007693 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001128 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007485 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005998 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031776 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005748 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002041 pyrF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001084 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007134 pyrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005884 pyrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002233 pyrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002634 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002395 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1424341 to 1435078
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004455acnACDSforward14232511425926Upstream
AEC-0001195ribACDScomplement14259901426580Upstream
AEC-0001196pgpBCDSforward14267501427514Upstream
AEC-0001197yciSCDSforward14276631427971Upstream
AEC-0001198yciMCDSforward14279781429147Upstream
AEC-0001199pyrFCDSforward14293411430078Matches
AEC-0001200yciHCDSforward14300781430404Overlaps Downstream
AEC-0001201osmBCDScomplement14305301430748Downstream
AEC-0001202yciTCDScomplement14310171431766Downstream
AEC-0001203gmrCDScomplement14321771434162Downstream
AEC-0001204rnbCDScomplement14343981436332Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948