Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001209 (sapD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001209 showshow history
Names
sapD ECDH10B_1408
Product
predicted antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1440056 1441048 993 331
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sapD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004342
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1408 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004342 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004342
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000972 sapD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000834 sapD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019262 sapD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001693 sapD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004113 sapD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006163 sapD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001361 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009898 sapD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001288 sapD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008119 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005209 sapD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005242 SapD CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077884 sapD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005449 sapD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006105 sapD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001589 sapD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005938 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002231 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005311 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009676 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010568 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007204 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006772 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007747 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011247 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007917 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008802 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008285 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007324 sapD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008699 sapD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026238 sapD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005962 sapD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006081 sapD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004342 sapD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001320 sapD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001372 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001830 sapD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131832 sapD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002270 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001574 sapD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062234 sapD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001139 sapD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003487 sapD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003578 sapD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005631 sapD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001321 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001975 sapD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005909 sapD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004386 sapD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004330 sapD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004772 sapD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006243 sapD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005184 sapD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005240 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004697 sapD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005317 sapD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006184 sapD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004599 sapD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001182 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001181 sapD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001574 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006431 sapD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005182 sapD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005908 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005244 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107851 sapD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083323 sapD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095520 sapD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007649 sapD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005894 sapD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007870 sapD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001968 sapD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006933 sapD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006526 sapD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001576 sapD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072439 sapD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087633 sapD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001383 sapD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002030 sapD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000522 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006245 sapD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000941 sapD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000714 sapD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002029 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239422 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006657 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002064 sapD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004848 sapD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001102 sapD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123092 sapD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007009 sapD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006706 sapD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002266 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007908 sapD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006100 sapD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031676 sapD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008097 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002192 sapD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000931 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007010 sapD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005751 sapD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002359 sapD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002802 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002228 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1435056 to 1446048
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001204rnbCDScomplement14343981436332Downstream
AEC-0001205yciWCDScomplement14364001437527Downstream
AEC-0001206fabICDScomplement14376711438459Downstream
AEC-0001207ycjDCDScomplement14388271439180Downstream
AEC-0001208sapFCDScomplement14392481440054Downstream
AEC-0001209sapDCDScomplement14400561441048Matches
AEC-0001210sapCCDScomplement14410481441938Overlaps Upstream
AEC-0001211sapBCDScomplement14419251442890Upstream
AEC-0001212sapACDScomplement14428871444530Upstream
AEC-0001213ymjACDScomplement14448431445088Upstream
AEC-0004502puuPCDScomplement14452221446607Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948