Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001214 (puuA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001214 showshow history
Names
puuA ECDH10B_1414
Product
gamma-Glu-putrescine synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1446910 1448328 1419 473
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008146 (IPR008146 Glutamine synthetase, catalytic domain) Jul 2009
Automated Process Approved IPR014746 (IPR014746 Glutamine synthetase/guanido kinase, catalytic domain) Jul 2009
Automated Process Approved IPR008147 (IPR008147 Glutamine synthetase, beta-Grasp domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004356 glutamate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name puuA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004365
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1414 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gamma-Glu-putrescine synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008146 Glutamine synthetase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR008146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008147 Glutamine synthetase, beta-Grasp domain Protein Sequence Similarity - InterPro Domain: IPR008147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR014746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004365 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004365
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006542 glutamine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008147
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006807 nitrogen compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR014746
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004356 glutamate-ammonia ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003548 puuA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002958 puuA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006169 puuA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009904 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008111 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005215 puuA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005236 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006111 puuA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005946 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002225 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005318 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009683 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007197 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006779 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007754 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011254 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007924 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008808 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008278 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007331 puuA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008692 puuA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026232 puuA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006088 puuA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004365 puuA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001326 puuA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001378 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001824 puuA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131838 puuA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002264 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001962 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006939 puuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006520 puuA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002247 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072446 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087639 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001389 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002024 puuA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1441910 to 1453328
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001210sapCCDScomplement14410481441938Downstream
AEC-0001211sapBCDScomplement14419251442890Downstream
AEC-0001212sapACDScomplement14428871444530Downstream
AEC-0001213ymjACDScomplement14448431445088Downstream
AEC-0004502puuPCDScomplement14452221446607Downstream
AEC-0001214puuACDScomplement14469101448328Matches
AEC-0001215puuDCDSforward14485401449304Upstream
AEC-0001216puuRCDSforward14493311449888Upstream
AEC-0001217puuCCDSforward14501631451650Upstream
AEC-0001218puuBCDSforward14516521452932Upstream
AEC-0001219puuECDSforward14529701454235Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948