Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001215 (puuD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001215 showshow history
Names
puuD ECDH10B_1415
Product
gamma-Glu-GABA hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1448540 1449304 765 255
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004468 (IPR004468 CTP synthase) Jul 2009
Automated Process Approved IPR011702 (IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily) Jul 2009
Automated Process Approved IPR011697 (IPR011697 Peptidase C26) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004468
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011697
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003883 CTP synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004468
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name puuD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004369
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1415 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gamma-Glu-GABA hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004468 CTP synthase Protein Sequence Similarity - InterPro Domain: IPR004468
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011697 Peptidase C26 Protein Sequence Similarity - InterPro Domain: IPR011697
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004369 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004369
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006221 pyrimidine nucleotide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004468
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011697
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003883 CTP synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004468
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003595 puuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003283 puuD CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004098 puuD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006170 puuD CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009905 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008110 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005216 puuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005235 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005440 puuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006112 puuD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005948 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002223 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005319 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009684 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009348 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007196 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006780 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007755 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011255 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007925 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008809 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008277 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007332 puuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008691 puuD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026231 puuD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006089 puuD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004369 puuD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001327 puuD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001379 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001823 puuD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131839 puuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002263 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006518 puuD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072447 ycjL CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087640 ycjL CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001390 ycjL CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002023 puuD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1443540 to 1454304
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001212sapACDScomplement14428871444530Upstream
AEC-0001213ymjACDScomplement14448431445088Upstream
AEC-0004502puuPCDScomplement14452221446607Upstream
AEC-0001214puuACDScomplement14469101448328Upstream
AEC-0001215puuDCDSforward14485401449304Matches
AEC-0001216puuRCDSforward14493311449888Downstream
AEC-0001217puuCCDSforward14501631451650Downstream
AEC-0001218puuBCDSforward14516521452932Downstream
AEC-0001219puuECDSforward14529701454235Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948