Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001218 (puuB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001218 showshow history
Names
puuB ECDH10B_1418
Product
gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1451652 1452932 1281 427
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name puuB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004378
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1418 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004378 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004378
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002441 puuB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002527 puuB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004095 puuB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006173 puuB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009908 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008107 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005219 puuB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005232 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005437 puuB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006115 puuB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005951 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000940 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005322 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009687 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009351 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007193 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006783 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007758 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011258 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007928 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008812 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008274 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007335 puuB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008688 puuB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026228 puuB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006092 puuB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004378 puuB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001330 puuB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001382 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001820 puuB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131842 puuB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002260 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001958 ordL CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006943 puuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006515 puuB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002243 ordL CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072450 ordL CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087643 ordL CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001393 ordL CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002020 puuB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1446652 to 1457932
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001214puuACDScomplement14469101448328Upstream
AEC-0001215puuDCDSforward14485401449304Upstream
AEC-0001216puuRCDSforward14493311449888Upstream
AEC-0001217puuCCDSforward14501631451650Upstream
AEC-0001218puuBCDSforward14516521452932Matches
AEC-0001219puuECDSforward14529701454235Downstream
AEC-0001220pspFCDScomplement14543551455332Downstream
AEC-0001221pspACDSforward14554991456167Downstream
AEC-0001222pspBCDSforward14562211456445Downstream
AEC-0001223pspCCDSforward14564451456804Downstream
AEC-0001224pspDCDSforward14568131457034Downstream
AEC-0001225pspECDSforward14571091457423Downstream
AEC-0001226ycjMCDSforward14576361459315Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948