Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001236 (ompG) - Escherichia coli K-12 DH10B - Feature Annotation

Overview
Context
Seq Similarity
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Context Table
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ASAP ID
AEC-0001236 showshow history
Names
ompG ECDH10B_1438
Product
outer membrane porin
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1469367 1470272 906 302
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Domains to toptop
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Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004425
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1438 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane porin Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004425 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004425
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003989 ompG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004184 ompG CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001384 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009927 ompG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001306 ompG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008084 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005238 ompG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005213 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077907 ompG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005417 ompG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006133 ompG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001612 ompG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005970 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000960 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005343 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009708 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009372 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007173 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006804 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007778 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011279 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007949 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008833 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008253 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007356 ompG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008667 ompG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026208 ompG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005985 ompG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006110 ompG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004425 ompG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001349 ompG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001400 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001802 ompG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131862 ompG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002239 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001597 ompG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001348 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006958 ompG CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006497 ompG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1464367 to 1475272
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001232ycjSCDSforward14642521465307Upstream
AEC-0001233ycjTCDSforward14653041467571Upstream
AEC-0001234ycjUCDSforward14675681468227Upstream
AEC-0001235ycjV_1CDSpforward14682411469209Upstream
AEC-0004503ycjVpseudogeneforward14682411469322Upstream
AEC-0004066ycjV_2CDSpforward14692091469322Upstream
AEC-0001236ompGCDSforward14693671470272Matches
AEC-0001237ycjWCDScomplement14703831471381Downstream
AEC-0001238ycjXCDSforward14715371472934Downstream
AEC-0001239ycjFCDSforward14729311473992Downstream
AEC-0001240tyrRCDSforward14741401475681Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948