Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001242 (ycjG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001242 showshow history
Names
ycjG ECDH10B_1444
Product
L-Ala-D/L-Glu epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1476350 1477315 966 322
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001354 (IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase) Jul 2009
Automated Process Approved IPR013341 (IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain) Jul 2009
Automated Process Approved IPR013342 (IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ycjG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004448
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1444 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-Ala-D/L-Glu epimerase Experimental - PubMed ID: 11747447
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR013341
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001354 (DEPRECATED) Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase Protein Sequence Similarity - InterPro Domain: IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004448 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004448
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001354
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000364 ycjG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000557 ycjG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019465 ycjG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001707 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004083 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006198 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001390 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009933 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001312 ycjG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008078 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005244 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005207 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077913 ycjG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005411 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006139 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001618 ycjG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005976 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000966 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005349 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009714 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009378 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007167 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006810 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007784 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011285 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007955 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008839 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008247 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007362 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008661 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026202 ycjG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005991 ycjG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006116 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004448 ycjG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001355 ycjG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001406 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001796 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131868 ycjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002233 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001603 ycjG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060340 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001256 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000361 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005645 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001354 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001961 ycjG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005923 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004433 ycjG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004377 ycjG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004786 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006229 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005170 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005221 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004683 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005303 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006170 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004613 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001205 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001203 ycjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001589 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006417 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005196 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005890 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005227 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107896 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083299 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095476 ycjG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007663 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005879 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007855 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001940 ycjG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006964 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001606 ycjG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072479 ycjG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087663 ycjG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001419 ycjG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001992 ycjG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001744 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006194 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000957 ycjG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000698 ycjG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002014 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239380 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006500 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002044 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004831 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001119 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123032 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007028 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006689 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002776 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007925 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006082 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031695 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008115 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002172 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000953 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007027 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002344 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002784 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002246 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1471350 to 1482315
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001237ycjWCDScomplement14703831471381Upstream
AEC-0001238ycjXCDSforward14715371472934Upstream
AEC-0001239ycjFCDSforward14729311473992Upstream
AEC-0001240tyrRCDSforward14741401475681Upstream
AEC-0001241tpxCDScomplement14757251476231Upstream
AEC-0001242ycjGCDSforward14763501477315Matches
AEC-0001243mpaACDScomplement14772901478018Overlaps Downstream
AEC-0004067ymjCCDScomplement14781001478282Downstream
AEC-0001244ycjYCDScomplement14783531479273Downstream
AEC-0001245ycjZCDSforward14794111480310Downstream
AEC-0001246mppACDSforward14806471482260Downstream
AEC-0001247ynaICDScomplement14823111483342Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948