Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001278 (trkG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001278 showshow history
Names
trkG ECDH10B_1486
Product
Rac prophage; potassium transporter subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1511202 1512659 1458 486
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011014 (IPR011014 Mechanosensitive ion channel MscS, transmembrane-2) Jul 2009
Automated Process Approved IPR004772 (IPR004772 TrkH potassium transport family) Jul 2009
Automated Process Approved IPR003445 (IPR003445 Cation transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trkG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004567
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1486 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product Rac prophage; potassium transporter subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Protein Sequence Similarity - InterPro Domain: IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003445 Cation transporter Protein Sequence Similarity - InterPro Domain: IPR003445
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004772 TrkH potassium transport family Protein Sequence Similarity - InterPro Domain: IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004567 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004567
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004772
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0007212 trkG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0006185 trkG CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004416 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005394 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001352 trkG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006194 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004567 trkG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001397 trkG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001460 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007347 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1506202 to 1517659
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004556Racprophageforward14993451523603Contains
AEC-0001269sieBCDSforward15060911506579Upstream
AEC-0004069ydaFCDScomplement15065761506731Upstream
AEC-0001270ydaGCDScomplement15067421506876Upstream
AEC-0001271racRCDScomplement15071851507661Upstream
AEC-0001272ydaSCDSforward15077851508081Upstream
AEC-0001273ydaTCDSforward15081041508526Upstream
AEC-0001274ydaUCDSforward15085391509396Upstream
AEC-0001275ydaVCDSforward15094031510149Upstream
AEC-0001276ydaWCDSforward15101721510732Upstream
AEC-0001277rzpRCDSforward15107651511064Upstream
AEC-0004070rzoRCDSforward15108201511005Upstream
AEC-0001278trkGCDSforward15112021512659Matches
AEC-0001279ynaKCDSforward15127971513060Downstream
AEC-0001280ydaYCDSforward15130411513400Downstream
AEC-0001281ynaACDSforward15138741514902Downstream
AEC-0004505lomRpseudogeneforward15148151515020(Interval #1) Downstream
AEC-0001282lomR_1CDSpforward15148781515033Downstream
AEC-0000026IS5.5repeat_regioncomplement15150191516214Downstream
AEC-0004506insH-5CDScomplement15151661516146Downstream
AEC-0004505lomRpseudogeneforward15162211516404(Interval #2) Downstream
AEC-0001283lomR_2CDSpforward15162341516404Downstream
AEC-0001284stfRCDSforward15164691519831Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948