Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001289 (ompN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001289 showshow history
Names
ompN ECDH10B_1500
Product
outer membrane pore protein N, non-specific
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1524379 1525512 1134 378
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001702 (IPR001702 Porin, Gram-negative type) Jul 2009
Automated Process Approved IPR001897 (IPR001897 Porin, gammaproteobacterial) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ompN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004608
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1500 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product outer membrane pore protein N, non-specific Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001702 Porin, Gram-negative type Protein Sequence Similarity - InterPro Domain: IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001897 Porin, gammaproteobacterial Protein Sequence Similarity - InterPro Domain: IPR001897
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004608 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004608
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002300 ompN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002132 ompN CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004532 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005401 ompN CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001414 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009958 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001387 ompN CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0008054 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005270 ompN CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005183 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0077938 ompN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005368 ompN CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006227 ompN CDS
Person Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001641 ompN CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006000 ompN CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000991 CDS
Person Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010934 ompN pseudogene
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0285386 ompN pseudogene
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006016 ompN CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006140 ompN CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0004608 ompN CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0001410 ompN CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0001489 CDS
Person Uncurated Go view Escherichia coli SMS-3-5 AFT-0001775 ompN CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285307 ompN pseudogene
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002131 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001625 ompN CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001449 ompN CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005875 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001562 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001726 ompN CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006139 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005146 ompN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004979 ompN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008912 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006004 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004940 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004986 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004451 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005071 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005949 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004838 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001390 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001382 ompN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001857 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006192 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006791 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005659 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004991 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108359 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083055 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094917 ompN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007895 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005649 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008505 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0001871 CDS
Person Uncurated Go view Shigella boydii BS512 ADJ-0007022 ompN CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0004326 ompN CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001677 ompN pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072517 ompN pseudogene
Automated Process Approved Go view Shigella flexneri 301 ABT-0088117 ompN pseudogene
Person Uncurated Go view Shigella flexneri 8401 BAG-0001942 ompN pseudogene
Automated Process Approved Go view Shigella sonnei 046 ADD-0001913 ompN CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006092 ompF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005533 ompF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006057 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004504 ompF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008284 ompF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005047 ompF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005197 ompF CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005852 ompF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001828 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003136 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1519379 to 1530512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004556Racprophageforward14993451523603Downstream
AEC-0001284stfRCDSforward15164691519831Downstream
AEC-0001285tfaRCDSforward15198311520406Downstream
AEC-0001286pinRCDScomplement15205041521094Downstream
AEC-0001287ynaECDScomplement15214111521677Downstream
AEC-0000027IS5.6repeat_regionforward15217671522960Downstream
AEC-0001288uspFCDScomplement15238041524238Downstream
AEC-0001289ompNCDScomplement15243791525512Matches
AEC-0004252micCncRNAforward15257401525848Upstream
AEC-0001290ydbKCDScomplement15258791529403Upstream
AEC-0004071ydbJCDSforward15296771529943Upstream
AEC-0001291hslJCDScomplement15299401530362Upstream
AEC-0001292ldhACDScomplement15304731531462Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948