Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001292 (ldhA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001292 showshow history
Names
ldhA ECDH10B_1505
Product
fermentative D-lactate dehydrogenase, NAD-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1530473 1531462 990 330
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR006139 (IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain) Jul 2009
Automated Process Approved IPR006140 (IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ldhA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004619
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1505 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product fermentative D-lactate dehydrogenase, NAD-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006139
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Protein Sequence Similarity - InterPro Domain: IPR006140
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004619 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004619
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051287 NAD binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006139
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048037 (OBSOLETE) cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006140
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001189 ldhA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001259 ldhA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019308 ldhA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001719 ldhA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004054 idhA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005406 idhA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001418 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009963 idhA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001391 ldhA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008048 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005276 idhA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005178 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077943 ldhA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005362 idhA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006233 idhA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001646 ldhA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006005 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000996 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005381 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009746 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009411 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007137 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006842 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007815 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011318 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007988 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008872 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008686 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007395 idhA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008628 idhA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026100 ldhA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006022 ldhA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006145 idhA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004619 ldhA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001415 ldhA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001494 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001770 idhA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131970 ldhA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002126 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001630 ldhA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062260 ldhA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003951 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001717 ldhA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003601 ldhA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005684 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001391 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001926 ldhA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005963 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004588 ldhA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004480 ldhA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004827 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006189 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005129 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005179 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004641 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005262 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006130 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004654 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001241 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001239 ldhA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001636 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006376 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005243 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005851 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005187 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107979 ldhA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083264 ldhA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095386 ldhA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007703 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005836 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007018 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001868 ldhA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007027 idhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004320 idhA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001683 ldhA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072527 ldhA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256006 ldhA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001934 ldhA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001909 ldhA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001732 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006146 hslI CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000967 ldhA1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000689 ldhA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000484 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239353 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006325 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002029 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004818 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001131 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122987 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007041 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007472 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003618 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007938 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006069 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031708 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008127 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002155 ldhA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000970 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007040 ldhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005779 ldhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002332 ldhA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002767 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002264 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1525473 to 1536462
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001289ompNCDScomplement15243791525512Downstream
AEC-0004252micCncRNAforward15257401525848Downstream
AEC-0001290ydbKCDScomplement15258791529403Downstream
AEC-0004071ydbJCDSforward15296771529943Downstream
AEC-0001291hslJCDScomplement15299401530362Downstream
AEC-0001292ldhACDScomplement15304731531462Matches
AEC-0001293ydbHCDSforward15316701534309Upstream
AEC-0001294ynbECDSforward15343061534491Upstream
AEC-0001295ydbLCDSforward15344991534825Upstream
AEC-0001296feaRCDScomplement15349971535902Upstream
AEC-0001297feaBCDSforward15361381537637Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948