Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001298 (tynA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001298 showshow history
Names
tynA ECDH10B_1511
Product
tyramine oxidase, copper-requiring
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1537695 1539968 2274 758
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015798 (IPR015798 Copper amine oxidase, catalytic domain) Jul 2009
Automated Process Approved IPR016182 (IPR016182 Copper amine oxidase, N-terminal) Jul 2009
Automated Process Approved IPR012854 (IPR012854 Copper amine oxidase-like, N-terminal) Jul 2009
Automated Process Approved IPR000269 (IPR000269 Copper amine oxidase) Jul 2009
Automated Process Approved IPR015800 (IPR015800 Copper amine oxidase, N2-terminal) Jul 2009
Automated Process Approved IPR015802 (IPR015802 Copper amine oxidase, N3-terminal) Jul 2009
Automated Process Approved IPR015801 (IPR015801 (DEPRECATED) Copper amine oxidase, N2/N3-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009308 amine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005507 copper ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008131 primary amine oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tynA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004639
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1511 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tyramine oxidase, copper-requiring Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000269 Copper amine oxidase Protein Sequence Similarity - InterPro Domain: IPR000269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012854 Copper amine oxidase-like, N-terminal Protein Sequence Similarity - InterPro Domain: IPR012854
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015800 Copper amine oxidase, N2-terminal Protein Sequence Similarity - InterPro Domain: IPR015800
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015802 Copper amine oxidase, N3-terminal Protein Sequence Similarity - InterPro Domain: IPR015802
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015801 (DEPRECATED) Copper amine oxidase, N2/N3-terminal Protein Sequence Similarity - InterPro Domain: IPR015801
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016182 Copper amine oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR016182
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015798 Copper amine oxidase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004639 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004639
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009308 amine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008131 primary amine oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0048038 quinone binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005507 copper ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015798
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005556 tynA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005425 tynA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008038 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005282 tynA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005172 tynA pseudogene
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005355 tynA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006239 tynA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006011 tynA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006151 tynA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004639 tynA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001421 tynA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001500 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1532695 to 1544968
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001293ydbHCDSforward15316701534309Downstream
AEC-0001294ynbECDSforward15343061534491Downstream
AEC-0001295ydbLCDSforward15344991534825Downstream
AEC-0001296feaRCDScomplement15349971535902Downstream
AEC-0001297feaBCDSforward15361381537637Downstream
AEC-0001298tynACDScomplement15376951539968Matches
AEC-0001299maoCCDScomplement15402161542261Upstream
AEC-0001300paaACDSforward15425461543475Upstream
AEC-0001301paaBCDSforward15434871543774Upstream
AEC-0001302paaCCDSforward15437831544529Upstream
AEC-0001303paaDCDSforward15445441545041Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948