Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0001305 (paaF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0001305 showshow history
Names
paaF ECDH10B_1518
Product
enoyl-CoA hydratase-isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1546116 1546883 768 256
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001753 (IPR001753 Enoyl-CoA hydratase/isomerase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name paaF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004659
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1518 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product enoyl-CoA hydratase-isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001753 Enoyl-CoA hydratase/isomerase Protein Sequence Similarity - InterPro Domain: IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0004659 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004659
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001753
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004960 paaF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004265 paaF CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009978 paaF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008031 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005164 PaaF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005347 paaF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006247 paaF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006018 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006158 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004659 paaF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001428 paaF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001507 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007081 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1541116 to 1551883
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001299maoCCDScomplement15402161542261Upstream
AEC-0001300paaACDSforward15425461543475Upstream
AEC-0001301paaBCDSforward15434871543774Upstream
AEC-0001302paaCCDSforward15437831544529Upstream
AEC-0001303paaDCDSforward15445441545041Upstream
AEC-0001304paaECDSforward15450491546119Overlaps Upstream
AEC-0001305paaFCDSforward15461161546883Matches
AEC-0001306paaGCDSforward15468831547671Overlaps Downstream
AEC-0001307paaHCDSforward15476731549100Downstream
AEC-0001308paaICDSforward15490901549512Downstream
AEC-0001309paaJCDSforward15495121550717Downstream
AEC-0001310paaKCDSforward15507441552057Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948